Docs quick reference

1. Changes in pangolin 4.0
2. pangolin 4.0 pipeline schema
3. pangolin 4.0 pipeline description

1. Using Bioconda or Mamba
2. For development
3. Dependencies If Not Installing Using the Conda Environment
4. Check the install worked
5. Troubleshooting update

1. For major releases
2. For minor releases
3. To only update the data models
4. Troubleshooting Update

1. Simple usage
2. Default behaviour
3. Analysis mode options
4. Output multiple sequence alignment
5. Full usage options

1. CSV Column headers
2. Example output

1. pangoLEARN description
2. Multinomial logistic regression
3. Decision trees
4. Random forests

1. pangolin requirements
2. Dependencies specific to pangolin 4.0
3. Dependencies specific to pangolin 3.0
4. All dependencies