B.1.1.7 2024-10-16
Description
Table 1 | Summary of B.1.1.7 data
Statistic | Information |
---|---|
Countries with sequences | 186 |
Sequence count | 1118858 |
Countries | United Kingdom 261970, United States of America 225196, Germany 106175, Sweden 66897, Denmark 63549, Japan 51911, Canada 36629, Spain 30205, Netherlands 29920, France 28992, Italy 24426, Switzerland 21078, Belgium 20893, Poland 15525, Ireland 14696, Norway 14380, Slovenia 8391, Israel 7130, Finland 6660, Greece 5384, Czech Republic 5104, Portugal 4799, Luxembourg 4600, Lithuania 4577, Slovakia 4521, Latvia 4392, Croatia 4115, India 4028, Estonia 3139, Austria 3128, Bulgaria 3074, Philippines 2580, Canary Islands 2239, Turkey 2073, Thailand 2066, Romania 1801, Mexico 1749, Brazil 1353, Kenya 994, Puerto Rico 926, South Korea 883, Cambodia 807, Lebanon 755, Russia 744, Cyprus 710, Mongolia 679, Pakistan 662, Iceland 569, Australia 558, Tunisia 554, Aruba 551, Sint Maarten 435, Ghana 413, Argentina 381, United Arab Emirates 372, Curaçao 316, North Macedonia 295, South Africa 271, Ecuador 263, Senegal 256, Martinique 249, Taiwan 246, Nigeria 245, Chile 223, Qatar 220, Iran 212, Gibraltar 210, Jamaica 201, Kazakhstan 191, Singapore 186, Bonaire 183, Panama 183, Costa Rica 171, Reunion 168, Gabon 148, New Zealand 144, Jordan 143, Sri Lanka 140, Oman 133, Iraq 131, Morocco 131, Republic of Serbia 131, Angola 129, Guadeloupe 126, U.S. Virgin Islands 124, Georgia 116, Vietnam 116, Ukraine 115, Cote d'Ivoire 114, Malta 113, Colombia 109, Guam 105, Bangladesh 101, Bahrain 84, Indonesia 82, Hong Kong 78, The Bahamas 75, Bosnia and Herzegovina 75, Djibouti 75, Benin 65, French Guiana 60, Montenegro 54, Afghanistan 51, Gambia 48, Suriname 46, Kyrgyzstan 42, Egypt 41, Guinea 37, Togo 34, Malaysia 34, Moldova 32, Saint Lucia 32, Hungary 31, Albania 31, Algeria 31, Cayman Islands 30, China 29, Kuwait 28, Palestine 27, Republic of the Congo 27, Belize 27, Guinea-Bissau 26, Kosovo 26, Madagascar 26, Uzbekistan 26, Peru 25, Laos 25, Ethiopia 25, Dominican Republic 24, Guatemala 23, Saudi Arabia 20, Uganda 17, Cameroon 16, Cabo Verde 16, Barbados 15, Liechtenstein 14, Maldives 13, Belarus 12, Venezuela 12, Armenia 12, Wallis and Futuna Islands 10, Central African Republic 10, Antigua and Barbuda 9, Mauritania 9, Rwanda 8, Andorra 7, Paraguay 7, Mauritius 7, Turks and Caicos Islands 6, Democratic Republic of the Congo 6, Somalia 6, Zambia 6, Eswatini 6, El Salvador 5, Trinidad and Tobago 5, Sudan 5, Malawi 5, Fiji 4, Sao Tome and Principe 4, Liberia 4, Libya 4, Uruguay 4, Niger 3, Nicaragua 3, Monaco 3, Haiti 3, Seychelles 3, Northern Mariana Islands 3, Azerbaijan 3, Mozambique 2, Mayotte 2, Burkina Faso 2, Montserrat 2, Nepal 2, Anguilla 2, South Sudan 2, Myanmar 2, Botswana 1, Faroe Islands 1, Guyana 1, Honduras 1, Burundi 1, Crimea 1, Bhutan 1, Bermuda 1, Dominica 1 |
First detected | United Kingdom |
Earliest sample date | 2020-09-03 |
Defining SNPs | aa:orf1ab:T1001I aa:orf1ab:A1708D aa:orf1ab:I2230T del:11288:9 del:21765:6 del:21991:3 aa:S:N501Y aa:S:A570D aa:S:P681H aa:S:T716I aa:S:S982A aa:S:D1118H aa:Orf8:Q27* aa:Orf8:R52I aa:Orf8:Y73C aa:N:D3L aa:N:S235F |
Figure 1 | Cumulative sequence count over time B.1.1.7
Bars show the number of new sequences on GISAID over time, binned by epi-week. The line shows the cumulative number of sequences over time.
Figure 2 | Date of earliest_B.1.1.7 detected
Schematic map showing the date of the first sequence sample date in each country containing the lineage. Darker countries have earlier first sample dates.
Figure 3 | Map of B.1.1.7 sequence counts
Map showing the logged number of sequences of the variant in each country. Countries with more sequences are shown in darker colours.
Figure 4 | Sequence count per country B.1.1.7
The number of sequences of the lineage recorded in each country. The height of the bar is the logged number and the numbers above the bar are the raw counts.
Figure 5 | Frequency B.1.1.7 in sequences produced since first new variant reported per country
The overall frequency of the lineage, defined as the number of sequences assigned the lineage divided by the total number of sequences from that country in the time since the variant was first sequenced in that country.
Figure 6 | B.1.1.7 count per continent
Seven day rolling average of sequence counts per continent. Please note that recent declines may be due to delay in reporting rather than reflecting a change in the underlying virus population.
Figure 7 | Rolling average B.1.1.7 frequency per continent
Seven day rolling average of frequency of sequences of the lineage of interest. Frequency is calculated by dividing the number of sequences of the lineage of interest by the total sequences for each continent for each day.
Figure 9 | Air traffic by destination B.1.1.7
The number of ticketed origin-to-destination journeys from London airports to countries outside the United Kingdom during October 2020.
Colours indicate numbers of published genomes of B.1.1.7 deposited on GISAID. Grey bars indicate countries that have reported the presence of the variant but have not yet published B.1.1.7 sequences on GISAID. White bars indicate countries with no reports of B.1.1.7.
Flight data come from the International Air Transportation Association that capture anonymized, passenger-level flight itinerary data, comprising both commercial flights and scheduled charter flights. These data account for ~90% of global air travel volumes, with the remaining volumes modelled using market intelligence. We report data from destinations including >5,000 passengers.
Note that flight data reflects final-destination on a booked journey, we cannot account for instances where two separate tickets were purchased.
Table 2 | Reported B.1.1.7 imports | Country count: 114
Table 3 | Raw data for figures
Country | Earliest sequence | Number of variant sequences | Total sequences since first variant sequence |
---|---|---|---|
Sweden | 2020-10-08 | 67151 | 269700 |
Japan | 2020-12-01 | 51942 | 660426 |
United States Of America | 2020-10-25 | 233018 | 4629712 |
France | 2020-09-03 | 30704 | 561360 |
Italy | 2020-10-09 | 25901 | 180029 |
Spain | 2020-10-14 | 30239 | 258220 |
Belgium | 2020-11-30 | 21003 | 173203 |
Mongolia | 2021-03-08 | 679 | 2403 |
Croatia | 2021-01-20 | 4115 | 44368 |
United Kingdom | 2020-09-20 | 262154 | 2885957 |
Ireland | 2020-10-28 | 14737 | 103852 |
New Zealand | 2020-12-16 | 144 | 46563 |
Poland | 2020-12-22 | 15543 | 92415 |
Canada | 2020-11-08 | 36641 | 577248 |
Slovakia | 2020-11-30 | 4524 | 46578 |
Czech Republic | 2021-01-04 | 5104 | 58113 |
Estonia | 2020-12-25 | 3166 | 14613 |
Gambia | 2021-01-06 | 48 | 577 |
Finland | 2020-12-18 | 6661 | 50546 |
Norway | 2020-12-09 | 14442 | 78102 |
Germany | 2020-11-30 | 106507 | 928161 |
Lithuania | 2021-02-02 | 9966 | 40028 |
Denmark | 2020-11-09 | 63751 | 658433 |
Latvia | 2021-01-12 | 4421 | 26371 |
Netherlands | 2020-11-29 | 30032 | 171364 |
Chile | 2020-12-22 | 223 | 45452 |
Puerto Rico | 2021-01-22 | 930 | 20805 |
Austria | 2020-11-23 | 3129 | 70827 |
Thailand | 2020-12-21 | 2066 | 36617 |
Lebanon | 2020-12-29 | 755 | 2057 |
Switzerland | 2020-11-09 | 21115 | 149907 |
Bulgaria | 2020-12-13 | 3074 | 21462 |
India | 2020-10-27 | 4032 | 195901 |
Slovenia | 2020-09-14 | 8392 | 83812 |
Jamaica | 2020-12-21 | 201 | 3949 |
Cambodia | 2021-02-03 | 811 | 4031 |
Togo | 2021-01-12 | 34 | 798 |
Romania | 2020-10-11 | 1803 | 20826 |
Gibraltar | 2020-12-15 | 210 | 2337 |
Luxembourg | 2020-12-24 | 4605 | 52902 |
Cayman Islands | 2020-12-15 | 30 | 369 |
Kenya | 2020-09-21 | 994 | 8654 |
Colombia | 2021-03-05 | 109 | 18207 |
Argentina | 2020-12-21 | 382 | 19283 |
Philippines | 2020-12-10 | 2582 | 25258 |
Tunisia | 2021-01-05 | 554 | 2338 |
Mexico | 2020-12-31 | 1780 | 88828 |
Brazil | 2020-12-21 | 1353 | 231092 |
Greece | 2020-12-11 | 5391 | 38745 |
Israel | 2020-12-16 | 7190 | 123999 |
Ghana | 2020-11-20 | 413 | 3331 |
Turkey | 2020-12-24 | 2073 | 101245 |
Malta | 2021-03-25 | 113 | 707 |
North Macedonia | 2021-01-04 | 295 | 1005 |
Mozambique | 2021-04-21 | 2 | 970 |
Uganda | 2021-03-25 | 17 | 1309 |
Ecuador | 2021-01-05 | 263 | 9300 |
Jordan | 2020-12-20 | 143 | 1017 |
Singapore | 2020-12-08 | 190 | 50610 |
Russia | 2020-12-25 | 745 | 74912 |
Hong Kong | 2020-12-06 | 78 | 17803 |
Australia | 2020-11-30 | 562 | 195835 |
China | 2021-01-17 | 29 | 83430 |
Senegal | 2020-09-22 | 256 | 2801 |
Guam | 2021-02-21 | 105 | 939 |
South Africa | 2021-01-05 | 271 | 41044 |
Gabon | 2020-12-28 | 148 | 519 |
Georgia | 2020-11-14 | 121 | 3367 |
Iraq | 2020-12-27 | 131 | 935 |
Peru | 2020-12-31 | 25 | 54529 |
Oman | 2020-12-22 | 133 | 1041 |
Nigeria | 2020-09-16 | 245 | 4913 |
South Korea | 2020-12-14 | 883 | 157171 |
Benin | 2021-01-30 | 67 | 1115 |
Belarus | 2021-02-23 | 14 | 302 |
Niger | 2021-01-09 | 3 | 97 |
Kazakhstan | 2021-02-09 | 191 | 3130 |
Qatar | 2020-12-27 | 220 | 4213 |
Bangladesh | 2020-12-31 | 101 | 5856 |
Guadeloupe | 2021-01-22 | 126 | 2267 |
Portugal | 2020-11-09 | 4823 | 47299 |
Iran | 2020-10-14 | 213 | 2457 |
Kyrgyzstan | 2021-02-28 | 42 | 238 |
Angola | 2021-01-15 | 130 | 806 |
Indonesia | 2021-01-05 | 82 | 49491 |
Morocco | 2021-01-08 | 131 | 2075 |
Laos | 2021-04-11 | 25 | 2314 |
Moldova | 2021-01-27 | 32 | 928 |
Montenegro | 2021-01-17 | 54 | 1129 |
Saudi Arabia | 2021-04-04 | 20 | 727 |
Taiwan | 2020-12-26 | 246 | 5909 |
Guinea | 2021-01-26 | 37 | 549 |
Bahrain | 2021-01-21 | 84 | 10873 |
Andorra | 2021-06-07 | 7 | 196 |
Costa Rica | 2021-02-22 | 171 | 12787 |
Dominican Republic | 2020-12-27 | 24 | 3221 |
The Bahamas | 2021-03-18 | 75 | 332 |
Ukraine | 2021-02-18 | 115 | 5451 |
Ivory Coast | 2020-12-07 | 114 | 824 |
Palestine | 2021-02-05 | 27 | 94 |
Pakistan | 2020-12-25 | 663 | 5602 |
Reunion | 2021-01-18 | 170 | 20614 |
Republic Of Congo | 2021-02-25 | 28 | 339 |
Democratic Republic Of The Congo | 2021-01-28 | 6 | 548 |
United Arab Emirates | 2020-10-01 | 375 | 5584 |
Curaçao | 2021-01-23 | 316 | 2323 |
Hungary | 2021-01-06 | 31 | 772 |
Afghanistan | 2021-03-21 | 51 | 89 |
Sri Lanka | 2021-01-02 | 466 | 2980 |
Cameroon | 2021-01-26 | 16 | 1494 |
Malaysia | 2020-12-28 | 34 | 40590 |
Iceland | 2020-12-02 | 580 | 18590 |
Saint Lucia | 2020-12-17 | 32 | 253 |
Mayotte | 2021-01-13 | 2 | 1072 |
Aruba | 2021-01-20 | 551 | 4127 |
Vietnam | 2021-01-02 | 116 | 8304 |
Liechtenstein | 2021-01-21 | 14 | 1092 |
Fiji | 2020-12-28 | 4 | 475 |
Rwanda | 2021-01-11 | 8 | 467 |
Bosnia And Herzegovina | 2020-12-25 | 75 | 1445 |
Barbados | 2020-12-31 | 15 | 307 |
Republic Of Serbia | 2020-12-13 | 131 | 2020 |
Nicaragua | 2021-05-01 | 3 | 534 |
Somalia | 2021-02-28 | 6 | 20 |
Djibouti | 2021-02-12 | 75 | 904 |
Kosovo | 2021-01-05 | 26 | 1794 |
Panama | 2021-03-25 | 186 | 5515 |
Belize | 2021-01-29 | 27 | 1019 |
Liberia | 2021-04-04 | 4 | 94 |
Botswana | 2021-05-15 | 1 | 2694 |
Egypt | 2021-03-01 | 41 | 2809 |
Zambia | 2020-12-01 | 6 | 969 |
Haiti | 2021-05-19 | 3 | 601 |
Ethiopia | 2021-01-23 | 25 | 683 |
Burkina Faso | 2021-01-16 | 2 | 158 |
Madagascar | 2021-03-15 | 26 | 354 |
Kuwait | 2020-12-31 | 28 | 978 |
Libya | 2021-02-17 | 4 | 118 |
Mauritania | 2021-01-04 | 9 | 126 |
Venezuela | 2021-03-18 | 12 | 1184 |
Cyprus | 2020-12-09 | 711 | 7112 |
El Salvador | 2021-04-29 | 5 | 983 |
Paraguay | 2021-02-28 | 7 | 3042 |
Suriname | 2021-02-18 | 46 | 871 |
Trinidad And Tobago | 2021-03-23 | 5 | 2616 |
Armenia | 2021-03-18 | 12 | 57 |
Sudan | 2021-03-04 | 5 | 427 |
Malawi | 2020-11-25 | 5 | 974 |
Albania | 2020-12-10 | 31 | 1620 |
Nepal | 2021-04-14 | 2 | 3012 |
Eswatini | 2021-06-02 | 6 | 957 |
Uzbekistan | 2021-03-05 | 26 | 115 |
Faroe Islands | 2021-03-08 | 1 | 1 |
Guatemala | 2021-03-11 | 23 | 5826 |
Algeria | 2021-02-17 | 31 | 767 |
Guyana | 2021-03-31 | 1 | 125 |
South Sudan | 2021-03-02 | 2 | 158 |
Myanmar | 2021-05-28 | 2 | 209 |
Central African Republic | 2021-01-20 | 10 | 142 |
Uruguay | 2021-07-07 | 4 | 708 |
Honduras | 2021-04-23 | 1 | 442 |
Burundi | 2021-05-27 | 1 | 72 |
Azerbaijan | 2021-02-01 | 3 | 73 |
Bhutan | 2021-04-16 | 1 | 134 |
Data source and processing
The data on this page is recent as of 2024-10-16, 14:27 GMT. All SARS-CoV-2 sequences were downloaded from GISAID and genomes were de-duplicated based on GISAID sequence name – note that the publically available metadata may not fully allow us to de-duplicate by patient. Full data processing pipeline found here. The sequences were then assigned lineages with pangolin 4.2, pangoLEARN version 2022-07-09.
Pangolin assigns B.1.1.7 to sequences with at least 5 of the 17 defining B.1.1.7 SNPs – defined here.
Caveat: Most locations outside the original focus have not reported sustained transmission and many cases have known travel links to the focal location. Increasing numbers of international cases is currently likely due to increased surveillance and vigilance.
Acknowledgements
Created by: Áine O'Toole and Verity Hill, Rambaut Group, University of Edinburgh. Flight volume data from Kamran Khan, Isaac Bogoch, Alexander Watts, Oliver Pybus, Moritz Kraemer. Sequences sourced from GISAID, full acknowledgements table here.
We have a publication in Wellcome Open Research here describing this web tracker.