SARS-CoV-2 lineages

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

Rambaut A, Holmes EC, O’Toole Á, Hill V, McCrone JT, Ruis C, du Plessis L & Pybus OG (2020) Nature Microbiology DOI:10.1038/s41564-020-0770-5

pangolin

Command line tool
Assign your CoV sequences a global lineage

llama

Local Lineage and Monophyly Assessment
Add your sequences to the global tree and check for new lineages

Global phylogeny of SARS-CoV-2

Phylogeny built and hosted by Rob Lanfear Lab

Suggest new lineages

Add your sequences to the list of circulating global lineages

pangolin web

Web application
Developed by the Centre for Genomic Pathogen Surveillance.

Lineage descriptions

More information about currently circulating global lineages