B.1.1.529 2022-01-22
Description
Table 1 | Summary of B.1.1.529 data
| Statistic | Information |
|---|---|
| Countries with sequences | 51 |
| Sequence count | 2597 |
| Countries | United States of America 1614, Turkey 368, India 94, Germany 76, Italy 67, United Kingdom 36, Thailand 32, Switzerland 25, Poland 25, Nepal 23, Brazil 22, Denmark 18, Belgium 16, South Africa 14, Spain 14, Botswana 13, Israel 13, Cambodia 12, France 12, Czech Republic 11, Mexico 11, Slovakia 9, Morocco 9, Puerto Rico 8, Slovenia 5, Kazakhstan 5, Colombia 4, Chile 4, Indonesia 3, Australia 3, Singapore 3, Antigua and Barbuda 2, Saint Vincent and the Grenadines 2, Finland 2, Ireland 2, New Zealand 2, Canada 2, Malta 2, Peru 2, Barbados 1, Romania 1, Nigeria 1, Saint-Martin 1, Ghana 1, Jordan 1, South Korea 1, Malaysia 1, Sweden 1, Mali 1, Mauritius 1, Sri Lanka 1 |
| First detected | South Africa and Botswana |
| Earliest sample date | 2021-11-12 |
| Defining SNPs | del:6513:3 del:11283:9 nuc:C241T ORF1A:K856R nuc:C3037T nuc:T5386G ORF1A:A2710T ORF1A:T3255I ORF1A:P3395H ORF1A:I3758V nuc:T13195C ORF1B:P314L nuc:C15240T ORF1B:I1566V S:A67V S:T95I S:G339D S:S371L S:S373P S:K417N S:N440K S:G446S S:S477N S:T478K S:E484A S:Q493R S:G496S S:Q498R S:N501Y S:T547K S:D614G S:H655Y S:N679K S:P681H S:N764K S:D796Y S:N856K S:Q954H S:N969K nuc:C25000T E:T9I M:D3G M:Q19E M:A63T nuc:A27259C nuc:C27807T N:RG203KR |
Table 3 | Raw data for figures
| Country | Earliest sequence | Number of variant sequences | Total sequences since first variant sequence |
|---|---|---|---|
| United Kingdom | 2021-12-02 | 36 | 305159 |
| Denmark | 2021-12-12 | 18 | 34674 |
| India | 2021-11-12 | 94 | 5828 |
| Botswana | 2021-11-15 | 13 | 793 |
| United States Of America | 2021-11-29 | 1614 | 295718 |
| Italy | 2021-12-08 | 67 | 8038 |
| Germany | 2021-12-03 | 76 | 46412 |
| Israel | 2021-12-13 | 13 | 3223 |
| Nepal | 2021-11-25 | 23 | 101 |
| Belgium | 2021-12-10 | 16 | 5875 |
| Barbados | 2021-12-16 | 1 | 1 |
| Indonesia | 2021-12-31 | 3 | 1014 |
| Cambodia | 2021-12-25 | 12 | 240 |
| Thailand | 2021-12-13 | 32 | 1177 |
| Turkey | 2021-12-15 | 368 | 4236 |
| South Africa | 2021-11-18 | 14 | 2887 |
| Spain | 2021-12-03 | 14 | 7977 |
| Slovenia | 2021-12-04 | 5 | 4111 |
| Switzerland | 2021-11-28 | 25 | 15384 |
| Puerto Rico | 2021-12-10 | 8 | 732 |
| France | 2021-12-12 | 12 | 14324 |
| Slovakia | 2021-12-15 | 9 | 440 |
| Romania | 2021-12-15 | 1 | 547 |
| Finland | 2021-12-13 | 2 | 480 |
| Brazil | 2021-12-09 | 22 | 2814 |
| Morocco | 2021-12-10 | 9 | 42 |
| Kazakhstan | 2021-12-21 | 5 | 7 |
| Colombia | 2021-12-04 | 4 | 536 |
| Czech Republic | 2021-12-22 | 11 | 1525 |
| Poland | 2021-12-21 | 25 | 5592 |
| Mexico | 2021-12-05 | 11 | 3378 |
| Chile | 2021-12-09 | 4 | 857 |
| Ireland | 2021-12-14 | 2 | 1536 |
| New Zealand | 2021-12-22 | 2 | 744 |
| Nigeria | 2021-12-13 | 1 | 62 |
| Australia | 2021-12-24 | 3 | 3171 |
| Saint-Martin | 2021-12-15 | 1 | 45 |
| Ghana | 2021-12-08 | 1 | 15 |
| Jordan | 2022-01-04 | 1 | 5 |
| Canada | 2021-12-22 | 2 | 2361 |
| South Korea | 2021-12-21 | 1 | 1096 |
| Malaysia | 2022-01-01 | 1 | 52 |
| Singapore | 2021-12-28 | 3 | 706 |
| Sweden | 2021-12-15 | 1 | 2656 |
| Malta | 2022-01-05 | 2 | 18 |
| Mali | 2021-12-23 | 1 | 1 |
| Peru | 2021-12-23 | 2 | 139 |
| Sri Lanka | 2022-01-10 | 1 | 9 |
Data source and processing
The data on this page is recent as of 2022-01-22, 20:37 GMT. All SARS-CoV-2 sequences were downloaded from GISAID and genomes were de-duplicated based on GISAID sequence name – note that the publically available metadata may not fully allow us to de-duplicate by patient. Full data processing pipeline found here. The sequences were then assigned lineages with pangolin 3.1.3, pangoLEARN version 2021-06-15.
Pangolin assigns B.1.1.529 to sequences with at least 32 of the 47 defining B.1.1.529 SNPs – defined here.
Caveat: Most locations outside the original focus have not reported sustained transmission and many cases have known travel links to the focal location. Increasing numbers of international cases is currently likely due to increased surveillance and vigilance.
Acknowledgements
Created by: Áine O'Toole and Verity Hill, Rambaut Group, University of Edinburgh. Flight volume data from Kamran Khan, Isaac Bogoch, Alexander Watts, Oliver Pybus, Moritz Kraemer. Sequences sourced from GISAID, full acknowledgements table here.
We have a publication in Wellcome Open Research here describing this web tracker.