This is a list of active lineages which have been seen in the last year. A complete list of lineages can be found on the Pango designation GitHub and a JSON file containing the equivalent data from this page for the full set of lineages can be downloaded in JSON format here.
| Lineage | Most common countries | Earliest date | # designated | # assigned | Description | WHO Name |
|---|---|---|---|---|---|---|
| B | United States of America 40.0%, United Kingdom 15.0%, China 8.0%, Mexico 5.0%, Germany 3.0% | 2019-12-24 | 3999 | 10435 | One of the two original haplotypes of the pandemic(and first to be discovered) | |
| B.1 | United States of America 47.0%, Turkey 11.0%, United Kingdom 7.0%, Canada 4.0%, France 3.0% | 2020-01-01 | 46223 | 115344 | A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020. | |
| B.1.1 | United Kingdom 25.0%, United States of America 15.0%, Russia 6.0%, Japan 6.0%, Turkey 5.0% | 2020-01-19 | 22778 | 51730 | European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC` | |
| B.1.1.7 | United Kingdom 23.0%, United States of America 20.0%, Germany 9.0%, Sweden 6.0%, Denmark 6.0% | 2020-01-19 | 69634 | 1118827 | UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html | |
| B.1.1.28 | Brazil 83.0%, Philippines 8.0%, United States of America 3.0%, Paraguay 2.0%, Japan 1.0% | 2020-02-10 | 854 | 5612 | Brazil mostly, absorbed B.1.1.94 and B.1.1.143 | |
| P.1 | Brazil 59.0%, United States of America 26.0%, Chile 3.0%, Argentina 1.0%, Spain 1.0% | 2020-04-07 | 29942 | 73078 | Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77 | |
| B.1.1.529 | United States of America 34.0%, Germany 13.0%, India 9.0%, Turkey 5.0%, Russia 5.0% | 2020-04-14 | 0 | 7726 | South Africa and Botswana lineage, from #343 | |
| BA.1.1 | United States of America 47.0%, United Kingdom 19.0%, Germany 7.0%, Canada 4.0%, France 2.0% | 2020-01-27 | 104388 | 972987 | Alias of B.1.1.529.1.1, from #360 | |
| BA.2 | United Kingdom 29.0%, Germany 13.0%, Denmark 12.0%, United States of America 11.0%, France 7.0% | 2020-03-28 | 112178 | 1209056 | Alias of B.1.1.529.2, from #361 | |
| BA.2.12.1 | United States of America 81.0%, Canada 5.0%, United Kingdom 2.0%, Germany 1.0%, Mexico 1.0% | 2020-04-15 | 39743 | 276678 | Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499 | |
| FK.1.1 | New_Zealand 26.0%, Australia 25.0%, United States of America 16.0%, South_Korea 13.0%, Japan 8.0% | 2023-02-08 | 53 | 1585 | Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, ORF1a:A1060T, on C27804T>ORF1b:L2580I>N:G34E branch, New Zealand, from #1881 | |
| BN.1.2 | South_Korea 28.0%, Japan 23.0%, United States of America 7.0%, Thailand 6.0%, Denmark 5.0% | 2022-01-24 | 2344 | 9554 | Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G | |
| FR.1.5 | Japan 87.0%, United States of America 5.0%, China 4.0%, Singapore 2.0%, Taiwan 2.0% | 2023-03-01 | 18 | 55 | Alias of B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan | |
| BN.1.3.5 | South_Korea 48.0%, Japan 19.0%, United States of America 7.0%, Australia 6.0%, Germany 3.0% | 2022-01-02 | 599 | 2101 | Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from #1516 | |
| BA.2.86 | South_Africa 34.0%, United States of America 10.0%, Australia 5.0%, Netherlands 5.0%, Germany 4.0% | 2023-03-11 | 28 | 898 | Alias of B.1.1.529.2.86, from #2183 | |
| BA.2.86.1 | Japan 20.0%, United Kingdom 11.0%, United States of America 9.0%, Denmark 8.0%, France 6.0% | 2023-01-03 | 22 | 9733 | Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236 | |
| JN.1 | United States of America 33.0%, Canada 9.0%, United Kingdom 8.0%, Spain 6.0%, China 4.0% | 2020-01-20 | 3989 | 99928 | Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe | |
| JN.1.1 | United States of America 22.0%, France 19.0%, Canada 7.0%, China 6.0%, United Kingdom 5.0% | 2021-07-16 | 692 | 20672 | Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987 | |
| JN.1.1.1 | Sweden 30.0%, France 15.0%, United Kingdom 11.0%, United States of America 8.0%, Italy 6.0% | 2023-09-25 | 24 | 566 | Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 | |
| JN.1.1.3 | Japan 23.0%, Sweden 20.0%, United Kingdom 14.0%, France 13.0%, United States of America 8.0% | 2023-11-04 | 68 | 71 | Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 | |
| JN.1.1.4 | France 43.0%, United States of America 19.0%, Spain 9.0%, United Kingdom 5.0%, South_Korea 3.0% | 2023-11-09 | 80 | 146 | Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476 | |
| JN.1.1.5 | United States of America 27.0%, Brazil 23.0%, Japan 10.0%, France 8.0%, Canada 4.0% | 2023-01-29 | 43 | 344 | Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492 | |
| KR.1 | United States of America 37.0%, Canada 25.0%, Singapore 6.0%, South_Korea 6.0%, Australia 5.0% | 2024-01-06 | 10 | 493 | Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253 | |
| JN.1.2 | United States of America 46.0%, Canada 37.0%, Greece 5.0%, United Kingdom 3.0%, Sweden 1.0% | 2023-01-03 | 43 | 2382 | Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 | |
| JN.1.3 | United States of America 30.0%, Netherlands 9.0%, Switzerland 7.0%, Canada 6.0%, United Kingdom 5.0% | 2023-03-04 | 23 | 446 | Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands | |
| JN.1.4 | United States of America 44.0%, Canada 8.0%, South_Korea 7.0%, United Kingdom 5.0%, Denmark 5.0% | 2023-02-14 | 129 | 44044 | Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381 | |
| JN.1.4.1 | United States of America 33.0%, Ireland 31.0%, United Kingdom 28.0%, Puerto_Rico 2.0%, Australia 2.0% | 2023-11-27 | 98 | 186 | Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175 | |
| JN.1.4.2 | United States of America 84.0%, South_Korea 4.0%, Canada 3.0%, Puerto_Rico 2.0%, United Kingdom 1.0% | 2023-11-17 | 387 | 1201 | Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462 | |
| JN.1.4.3 | United States of America 64.0%, Canada 9.0%, United Kingdom 8.0%, China 4.0%, Australia 2.0% | 2023-11-14 | 36 | 382 | Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487 | |
| KQ.1 | United States of America 86.0%, Canada 6.0%, United Kingdom 5.0%, Puerto_Rico 1.0%, Poland 1.0% | 2024-01-04 | 64 | 786 | Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487 | |
| JN.1.5 | Singapore 26.0%, China 16.0%, South_Korea 10.0%, Japan 10.0%, United States of America 9.0% | 2023-10-30 | 539 | 2908 | Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 | |
| JN.1.6 | United States of America 58.0%, Switzerland 6.0%, France 5.0%, China 5.0%, Canada 5.0% | 2023-10-11 | 141 | 1199 | Alias of B.1.1.529.2.86.1.1.6, G22627A | |
| JN.1.6.1 | Sweden 48.0%, United States of America 19.0%, United Kingdom 18.0%, Spain 4.0%, Germany 4.0% | 2023-11-26 | 34 | 272 | Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089 | |
| JN.1.7 | United States of America 47.0%, United Kingdom 15.0%, Canada 10.0%, Spain 4.0%, Ireland 3.0% | 2022-10-18 | 66 | 7601 | Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097 | |
| JN.1.7.1 | United Kingdom 79.0%, United States of America 7.0%, New_Zealand 2.0%, Ireland 2.0%, Canada 2.0% | 2023-12-31 | 21 | 207 | Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371 | |
| JN.1.7.2 | United States of America 37.0%, Canada 19.0%, Chile 11.0%, United Kingdom 9.0%, Argentina 5.0% | 2023-12-09 | 110 | 820 | Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas | |
| JN.1.8 | United States of America 37.0%, United Kingdom 15.0%, Canada 7.0%, Spain 6.0%, France 4.0% | 2023-02-26 | 110 | 1874 | Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I | |
| JN.1.8.1 | United States of America 71.0%, Canada 17.0%, United Kingdom 2.0%, Japan 1.0%, Chile 1.0% | 2023-02-26 | 96 | 3710 | Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 | |
| JN.1.9 | United States of America 50.0%, United Kingdom 12.0%, Spain 10.0%, Canada 9.0%, Puerto_Rico 4.0% | 2023-10-03 | 238 | 2337 | Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 | |
| JN.1.9.1 | United Kingdom 64.0%, Australia 7.0%, New_Zealand 7.0%, Ireland 6.0%, Canada 5.0% | 2023-12-04 | 26 | 345 | Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097 | |
| JN.1.10 | United States of America 19.0%, Canada 10.0%, Spain 10.0%, Germany 9.0%, United Kingdom 8.0% | 2023-11-07 | 29 | 154 | Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 | |
| JN.1.11 | United States of America 23.0%, India 22.0%, Spain 14.0%, Japan 7.0%, Italy 5.0% | 2023-12-07 | 2 | 595 | Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 | |
| JN.1.11.1 | United States of America 17.0%, United Kingdom 16.0%, Canada 16.0%, Spain 13.0%, Japan 9.0% | 2023-12-23 | 17 | 27235 | Alias of B.1.1.529.2.86.1.1.11.1, S:F456L (T22928C), after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 | |
| KP.1 | United States of America 38.0%, Canada 12.0%, New_Zealand 8.0%, United Kingdom 8.0%, Australia 7.0% | 2023-12-30 | 28 | 721 | Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364 | |
| KP.1.1 | United States of America 30.0%, Singapore 13.0%, Canada 13.0%, United Kingdom 11.0%, Australia 5.0% | 2024-01-27 | 8 | 5937 | Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 | |
| KP.2 | United States of America 29.0%, United Kingdom 15.0%, Singapore 13.0%, Canada 12.0%, Spain 4.0% | 2023-10-21 | 7 | 15548 | Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 | |
| JN.1.12 | Italy 24.0%, South_Korea 24.0%, United States of America 19.0%, Poland 7.0%, Belgium 5.0% | 2023-11-26 | 11 | 42 | Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 | |
| JN.1.13 | United States of America 37.0%, Sweden 19.0%, Canada 11.0%, United Kingdom 8.0%, Spain 7.0% | 2023-12-10 | 21 | 123 | Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 | |
| JN.1.13.1 | United States of America 39.0%, Canada 18.0%, United Kingdom 9.0%, Russia 7.0%, Singapore 5.0% | 2023-12-07 | 241 | 4289 | Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 | |
| JN.1.14 | United States of America 93.0%, Taiwan 3.0%, Dominican_Republic 2.0%, Puerto_Rico 2.0% | 2023-12-20 | 23 | 58 | Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA | |
| JN.1.15 | United States of America 27.0%, Spain 14.0%, United Kingdom 9.0%, Ecuador 9.0%, Australia 6.0% | 2023-11-09 | 50 | 542 | Alias of B.1.1.529.2.86.1.1.15, S:A688V | |
| JN.1.16 | United States of America 26.0%, Canada 11.0%, United Kingdom 9.0%, China 9.0%, Spain 9.0% | 2023-11-07 | 47 | 16612 | Alias of B.1.1.529.2.86.1.1.16, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253 | |
| JN.1.17 | United States of America 95.0%, Canada 1.0%, Japan 1.0%, Netherlands 1.0%, France 1.0% | 2023-02-08 | 58 | 135 | Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA | |
| JN.1.18 | United States of America 30.0%, United Kingdom 12.0%, Canada 7.0%, Japan 5.0%, France 4.0% | 2023-11-02 | 134 | 4720 | Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 | |
| JN.1.19 | United States of America 29.0%, Netherlands 11.0%, United Kingdom 10.0%, Denmark 10.0%, Russia 7.0% | 2023-10-02 | 715 | 1573 | Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V | |
| JN.1.20 | South_Korea 45.0%, China 13.0%, United States of America 12.0%, Australia 6.0%, Canada 4.0% | 2023-01-02 | 66 | 1143 | Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy | |
| JN.1.21 | Chile 43.0%, United States of America 22.0%, Austria 4.0%, Switzerland 3.0%, Canada 3.0% | 2023-11-08 | 128 | 506 | Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162 | |
| JN.1.22 | Canada 32.0%, United States of America 22.0%, United Kingdom 8.0%, Spain 4.0%, Belgium 4.0% | 2023-10-22 | 1541 | 3063 | Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465 | |
| JN.1.23 | Brazil 73.0%, United States of America 15.0%, Canada 4.0%, South_Korea 3.0%, Portugal 2.0% | 2024-01-01 | 48 | 254 | Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488 | |
| JN.1.24 | United States of America 56.0%, United Kingdom 9.0%, Costa_Rica 5.0%, Spain 4.0%, Israel 4.0% | 2023-11-10 | 117 | 183 | Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA | |
| JN.1.25.1 | United Kingdom 33.0%, United States of America 31.0%, India 20.0%, Canada 12.0%, Netherlands 4.0% | 2023-12-17 | 16 | 49 | Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India | |
| JN.2 | Sweden 34.0%, United Kingdom 17.0%, Canada 12.0%, United States of America 8.0%, Japan 5.0% | 2022-10-22 | 111 | 3968 | Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 | |
| JN.2.2 | Netherlands 43.0%, Germany 12.0%, Turkey 10.0%, United Kingdom 6.0%, Sweden 5.0% | 2023-10-27 | 41 | 128 | Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 | |
| JN.2.5 | Canada 82.0%, Brazil 7.0%, United States of America 6.0%, United Kingdom 1.0%, Lithuania 1.0% | 2023-10-30 | 85 | 780 | Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania, from sars-cov-2-variants/lineage-proposals#1173 | |
| JN.3.2.1 | Germany 51.0%, Switzerland 9.0%, United States of America 9.0%, Luxembourg 7.0%, United Kingdom 5.0% | 2023-11-07 | 24 | 55 | Alias of B.1.1.529.2.86.1.3.2.1, S:F456V, N:S327L, Germany, from #2445 | |
| JN.4 | Belgium 31.0%, United Kingdom 12.0%, Netherlands 11.0%, France 10.0%, United States of America 7.0% | 2022-10-18 | 40 | 561 | Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark, from sars-cov-2-variants/lineage-proposals#1009 | |
| JN.6 | United Kingdom 47.0%, United States of America 9.0%, Lithuania 8.0%, Denmark 7.0%, Finland 4.0% | 2023-09-12 | 36 | 720 | Alias of B.1.1.529.2.86.1.6, S:V193L | |
| JN.7 | Denmark 68.0%, Slovakia 14.0%, Germany 7.0%, Japan 2.0%, Austria 2.0% | 2023-08-14 | 22 | 164 | Alias of B.1.1.529.2.86.1.7, S:G594S, Denmark, from sars-cov-2-variants/lineage-proposals#856 | |
| JN.9 | Netherlands 37.0%, United Kingdom 12.0%, Japan 10.0%, Denmark 10.0%, Greece 6.0% | 2023-08-21 | 33 | 347 | Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands | |
| JN.10 | Spain 34.0%, United Kingdom 13.0%, United States of America 8.0%, Poland 7.0%, Italy 7.0% | 2022-10-18 | 25 | 357 | Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954 | |
| JN.11 | Japan 34.0%, Denmark 18.0%, United States of America 13.0%, South_Korea 8.0%, Singapore 6.0% | 2023-04-12 | 78 | 379 | Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303 | |
| JN.12 | Poland 34.0%, Germany 17.0%, Sweden 11.0%, Netherlands 9.0%, Japan 6.0% | 2023-11-09 | 15 | 35 | Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102 | |
| JN.13 | United States of America 40.0%, Canada 18.0%, Australia 12.0%, South_Korea 6.0%, New_Zealand 6.0% | 2023-10-13 | 56 | 65 | Alias of B.1.1.529.2.86.1.13, A14397G | |
| JN.13.1 | United States of America 44.0%, Malaysia 24.0%, Japan 13.0%, United Kingdom 8.0%, Canada 5.0% | 2023-10-19 | 43 | 63 | Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386 | |
| BA.2.86.2 | South_Africa 34.0%, United Kingdom 24.0%, Mauritius 9.0%, Australia 7.0%, United States of America 6.0% | 2023-07-24 | 26 | 384 | Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756 | |
| BA.2.86.3 | Japan 31.0%, United Kingdom 17.0%, Australia 10.0%, South_Africa 10.0%, Denmark 5.0% | 2023-08-10 | 11 | 396 | Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa | |
| JQ.2 | South_Africa 58.0%, United Kingdom 14.0%, Canada 14.0%, United States of America 4.0%, Netherlands 3.0% | 2023-09-28 | 5 | 91 | Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505 | |
| BA.4.6 | United States of America 60.0%, Canada 7.0%, United Kingdom 6.0%, France 3.0%, Denmark 3.0% | 2020-02-02 | 1179 | 53196 | Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741 | |
| BA.5 | United States of America 34.0%, Germany 10.0%, United Kingdom 8.0%, France 8.0%, Denmark 4.0% | 2020-07-01 | 2461 | 32782 | Alias of B.1.1.529.5, from #517 | |
| BA.5.1 | United States of America 18.0%, Germany 11.0%, France 10.0%, United Kingdom 10.0%, Denmark 7.0% | 2020-03-14 | 23500 | 229698 | Alias of B.1.1.529.5.1, Portugal lineage | |
| BA.5.1.5 | United States of America 19.0%, United Kingdom 12.0%, Japan 11.0%, Germany 10.0%, France 6.0% | 2022-04-26 | 180 | 9957 | Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from #835 | |
| BA.5.2 | Japan 18.0%, United States of America 17.0%, Germany 7.0%, United Kingdom 6.0%, Russia 5.0% | 2020-07-02 | 10665 | 279160 | Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551 | |
| BA.5.2.1 | United States of America 38.0%, Japan 12.0%, Germany 5.0%, Canada 5.0%, United Kingdom 5.0% | 2020-07-06 | 14516 | 291168 | Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from #657 | |
| BF.2 | Japan 21.0%, France 18.0%, Denmark 16.0%, United Kingdom 8.0%, United States of America 7.0% | 2022-02-01 | 138 | 2526 | Alias of B.1.1.529.5.2.1.2, Denmark lineage | |
| BF.11.2 | United Kingdom 56.0%, Sweden 14.0%, Denmark 12.0%, United States of America 4.0%, Norway 3.0% | 2022-09-12 | 26 | 981 | Alias of B.1.1.529.5.2.1.11.2, Wales, S:K147N | |
| BF.11.3 | Canada 29.0%, Austria 24.0%, Germany 16.0%, United States of America 9.0%, France 4.0% | 2022-07-25 | 78 | 640 | Alias of B.1.1.529.5.2.1.11.3, ORF1a:L122F | |
| BF.31.1 | Chile 64.0%, Canada 12.0%, United States of America 12.0%, Austria 3.0%, Australia 2.0% | 2022-07-27 | 99 | 777 | Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248- | |
| CK.1.3 | United States of America 67.0%, Mexico 11.0%, Canada 10.0%, United Kingdom 3.0%, South_Korea 2.0% | 2022-10-10 | 293 | 302 | Alias of B.1.1.529.5.2.24.1.3, Mexico, S:F157L, S:G181V | |
| BE.1.1 | Germany 39.0%, United States of America 11.0%, Denmark 7.0%, United Kingdom 7.0%, Japan 4.0% | 2021-07-16 | 6604 | 57098 | Alias of B.1.1.529.5.3.1.1.1, Germany lineage | |
| BQ.1.1 | United States of America 30.0%, France 11.0%, Canada 8.0%, United Kingdom 7.0%, Germany 5.0% | 2020-10-15 | 9868 | 161447 | Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from #993 | |
| BQ.1.1.11 | Japan 16.0%, United States of America 13.0%, Germany 12.0%, France 10.0%, Italy 8.0% | 2022-08-01 | 246 | 952 | Alias of B.1.1.529.5.3.1.1.1.1.1.1.11, S:S494P | |
| EF.1.2 | Spain 46.0%, United States of America 16.0%, Germany 7.0%, United Kingdom 5.0%, France 3.0% | 2022-01-26 | 365 | 646 | Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.2, Spain, T15492C | |
| BQ.1.1.23 | France 23.0%, Germany 15.0%, United States of America 14.0%, United Kingdom 10.0%, Austria 4.0% | 2022-07-25 | 56 | 2862 | Alias of B.1.1.529.5.3.1.1.1.1.1.1.23, France, ORF3a:V97I, S:Y144-, on G6421T branch | |
| BQ.1.1.57 | United States of America 48.0%, United Kingdom 30.0%, Spain 6.0%, Ireland 4.0%, France 3.0% | 2022-09-28 | 400 | 511 | Alias of B.1.1.529.5.3.1.1.1.1.1.1.57 S:S256A | |
| FB.1 | Japan 37.0%, Taiwan 21.0%, United States of America 16.0%, South_Korea 14.0%, Canada 3.0% | 2022-11-14 | 25 | 184 | Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, from #1714 | |
| B.1.243 | United States of America 95.0%, Mexico 3.0%, Canada 1.0%, Northern_Mariana_Islands 0.0%, Puerto_Rico 0.0% | 2020-03-23 | 4096 | 15741 | USA lineage | |
| B.1.351 | South_Africa 20.0%, Philippines 9.0%, United States of America 9.0%, Sweden 8.0%, Germany 7.0% | 2020-02-18 | 1279 | 32853 | Lineage of concern detected in South Africa | |
| B.1.617 | India 79.0%, United Kingdom 5.0%, Australia 4.0%, United States of America 3.0%, Canada 2.0% | 2020-03-06 | 1 | 2968 | Predominantly India lineage with several spike mutations, from #38 | |
| B.1.617.2 | India 22.0%, Turkey 16.0%, United States of America 14.0%, Germany 7.0%, United Kingdom 7.0% | 2020-03-27 | 8273 | 279167 | Predominantly India lineage with several spike mutations, from #49 | |
| B.1.621 | United States of America 38.0%, Colombia 28.0%, Chile 8.0%, Spain 5.0%, Ecuador 4.0% | 2020-12-15 | 13 | 12219 | Lineage predominantly in Colombia with several spike mutations, from #57 | |
| XBB.1 | United States of America 25.0%, Indonesia 7.0%, Singapore 7.0%, Malaysia 6.0%, United Kingdom 5.0% | 2022-01-04 | 5861 | 25805 | Mostly Bangladesh and Singapore, defined by S:G252V, from #1088 | |
| XBB.1.5 | United States of America 55.0%, Canada 8.0%, United Kingdom 6.0%, Spain 3.0%, Germany 3.0% | 2020-04-04 | 9307 | 172436 | USA, S:F486P | |
| XBB.1.5.66 | United States of America 69.0%, Canada 6.0%, Spain 5.0%, France 3.0%, United Kingdom 3.0% | 2022-11-30 | 639 | 1291 | ORF1a:G519S, USA | |
| GK.1.1 | Japan 33.0%, Brazil 20.0%, United States of America 20.0%, Canada 8.0%, United Kingdom 2.0% | 2021-07-16 | 6 | 5745 | Alias of XBB.1.5.70.1.1, S:T573I, Brazil | |
| GK.1.1.1 | United States of America 40.0%, Chile 27.0%, Canada 9.0%, Argentina 5.0%, Greece 3.0% | 2022-10-02 | 174 | 1117 | Alias of XBB.1.5.70.1.1.1, C28432T | |
| GN.1.3 | United Kingdom 27.0%, France 23.0%, Sweden 14.0%, United States of America 9.0%, Italy 9.0% | 2023-08-30 | 8 | 22 | Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816 | |
| JD.1 | Brazil 55.0%, United States of America 15.0%, Australia 5.0%, France 5.0%, Canada 4.0% | 2023-05-11 | 15 | 517 | Alias of XBB.1.5.102.1, S:L455F (G22927T), S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071 | |
| JD.1.1 | United States of America 25.0%, Spain 10.0%, Brazil 9.0%, Canada 9.0%, United Kingdom 7.0% | 2021-07-16 | 29 | 9383 | Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain, from #2174 | |
| JD.1.1.8 | Brazil 49.0%, United States of America 18.0%, Canada 9.0%, United Kingdom 5.0%, Japan 3.0% | 2023-07-22 | 264 | 1452 | Alias of XBB.1.5.102.1.1.8, ORF1a:N1094K, without C19185T, Brazil | |
| XBB.1.9.1 | United States of America 12.0%, United Kingdom 9.0%, Russia 6.0%, France 6.0%, Japan 5.0% | 2021-03-01 | 264 | 14522 | S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England | |
| FL.1.5.1 | United States of America 63.0%, Canada 10.0%, United Kingdom 5.0%, France 3.0%, Spain 2.0% | 2022-10-12 | 32 | 14777 | Alias of XBB.1.9.1.1.5.1, S:478R, from #2036 | |
| HN.2.1 | Spain 31.0%, France 16.0%, United Kingdom 10.0%, United States of America 9.0%, Lithuania 4.0% | 2021-12-22 | 123 | 224 | Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-proposals#676 | |
| FL.3.3 | United Kingdom 86.0%, Japan 2.0%, United States of America 2.0%, Italy 1.0%, Canada 1.0% | 2023-01-08 | 298 | 411 | Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England | |
| FL.4 | China 16.0%, United States of America 15.0%, Japan 11.0%, Spain 6.0%, France 6.0% | 2022-10-18 | 311 | 7450 | Alias of XBB.1.9.1.4, ORF1b:V1092F | |
| FL.15.1.1 | United States of America 14.0%, Italy 14.0%, Sweden 9.0%, United Kingdom 6.0%, France 5.0% | 2023-08-10 | 7 | 1344 | Alias of XBB.1.9.1.15.1.1, S:A475V, Canada/Romania/Belgium, from sars-cov-2-variants/lineage-proposals#646 | |
| FL.24.1 | Russia 64.0%, Poland 5.0%, Canada 5.0%, United States of America 5.0%, United Kingdom 2.0% | 2023-05-08 | 449 | 790 | Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia, from sars-cov-2-variants/lineage-proposals#789 | |
| FL.34 | South_Korea 61.0%, Japan 21.0%, United States of America 10.0%, China 2.0%, Canada 2.0% | 2023-03-11 | 151 | 195 | Alias of XBB.1.9.1.34, S:D1118Y | |
| EG.1 | Australia 15.0%, South_Korea 14.0%, Japan 10.0%, United States of America 10.0%, France 6.0% | 2022-10-18 | 49 | 8655 | Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and jmcbroome/auto-pango-designation#193 | |
| EG.5 | United States of America 32.0%, South_Korea 25.0%, Greece 10.0%, China 7.0%, Spain 4.0% | 2023-02-17 | 5 | 752 | Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia, from #1918 | |
| EG.5.1 | United States of America 25.0%, Japan 23.0%, South_Korea 10.0%, Canada 8.0%, Spain 4.0% | 2021-07-16 | 21 | 15588 | Alias of XBB.1.9.2.5.1, S:Q52H | |
| EG.5.1.1 | United States of America 18.0%, China 18.0%, Japan 11.0%, South_Korea 11.0%, Canada 9.0% | 2020-12-22 | 67 | 35335 | Alias of XBB.1.9.2.5.1.1, China, from #2020 | |
| HK.1 | China 46.0%, United States of America 11.0%, Japan 9.0%, Canada 6.0%, South_Korea 4.0% | 2023-05-13 | 32 | 635 | Alias of XBB.1.9.2.5.1.1.1, S:G257V, China, from sars-cov-2-variants/lineage-proposals#359 | |
| HK.1.2 | New_Zealand 58.0%, China 12.0%, Australia 9.0%, Japan 8.0%, United States of America 6.0% | 2023-07-04 | 51 | 843 | Alias of XBB.1.9.2.5.1.1.1.2, S:L455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631 | |
| HK.3 | South_Korea 25.0%, China 13.0%, United States of America 12.0%, Japan 8.0%, Canada 8.0% | 2022-12-12 | 65 | 20558 | Alias of XBB.1.9.2.5.1.1.3, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#414 | |
| HK.3.1 | China 26.0%, United States of America 12.0%, Japan 9.0%, South_Korea 7.0%, New_Zealand 6.0% | 2023-07-31 | 29 | 2052 | Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193 | |
| HK.3.2 | China 26.0%, Japan 18.0%, South_Korea 12.0%, United States of America 10.0%, Australia 5.0% | 2023-01-01 | 920 | 5240 | Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, C853T, China，from sars-cov-2-variants/lineage-proposals#730 | |
| HK.3.9 | Australia 69.0%, United States of America 11.0%, Singapore 6.0%, Italy 5.0%, New_Zealand 4.0% | 2023-09-08 | 59 | 116 | Alias of XBB.1.9.2.5.1.1.3.9, S:T732I, Australia, from sars-cov-2-variants/lineage-proposals#1092 | |
| HK.3.10 | United States of America 25.0%, Australia 19.0%, Japan 10.0%, Singapore 9.0%, New_Zealand 8.0% | 2023-08-21 | 108 | 255 | Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S, from sars-cov-2-variants/lineage-proposals#1055 | |
| HK.3.13 | China 54.0%, United States of America 15.0%, South_Korea 10.0%, Japan 8.0%, Australia 3.0% | 2023-09-02 | 95 | 348 | Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China, from sars-cov-2-variants/lineage-proposals#601 | |
| HK.3.14 | United States of America 32.0%, Japan 18.0%, Australia 16.0%, South_Korea 12.0%, United Kingdom 5.0% | 2023-02-01 | 49 | 260 | Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia, from sars-cov-2-variants/lineage-proposals#978 | |
| HK.6 | United Kingdom 23.0%, United States of America 17.0%, Spain 13.0%, Canada 7.0%, Greece 6.0% | 2023-06-26 | 76 | 2490 | Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, on T14988C branch UK/USA, from #2184 | |
| HK.12 | Singapore 37.0%, China 14.0%, South_Korea 12.0%, Canada 9.0%, Japan 6.0% | 2023-05-16 | 15 | 289 | Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore | |
| HK.13.1 | Singapore 24.0%, China 15.0%, United States of America 9.0%, Japan 6.0%, Lithuania 4.0% | 2023-07-10 | 70 | 813 | Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G | |
| HK.20.1 | United States of America 40.0%, Japan 14.0%, Canada 11.0%, South_Korea 5.0%, United Kingdom 5.0% | 2023-08-13 | 62 | 905 | Alias of XBB.1.9.2.5.1.1.20.1, S:G482R, from sars-cov-2-variants/lineage-proposals#537 | |
| HK.27.1 | South_Korea 29.0%, China 20.0%, United States of America 13.0%, Canada 12.0%, Singapore 5.0% | 2023-06-27 | 906 | 1765 | Alias of XBB.1.9.2.5.1.1.27.1, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#525 | |
| HK.30 | Canada 16.0%, United States of America 12.0%, Russia 12.0%, United Kingdom 10.0%, Spain 8.0% | 2022-10-10 | 808 | 1086 | Alias of XBB.1.9.2.5.1.1.30, T26609C, China | |
| HK.33 | United States of America 35.0%, Canada 21.0%, New_Zealand 16.0%, South_Korea 11.0%, China 4.0% | 2023-08-21 | 86 | 140 | Alias of XBB.1.9.2.5.1.1.33, S:L455F (G22927T) on C2644T branch, North America, from sars-cov-2-variants/lineage-proposals#537 | |
| EG.5.1.2 | Japan 57.0%, United States of America 19.0%, Spain 5.0%, Canada 4.0%, United Kingdom 3.0% | 2023-04-06 | 64 | 785 | Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301 | |
| EG.5.1.3 | United States of America 22.0%, France 17.0%, Canada 10.0%, Spain 9.0%, United Kingdom 8.0% | 2021-07-16 | 126 | 13792 | Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222 | |
| JG.2 | United States of America 19.0%, United Kingdom 13.0%, Spain 12.0%, Italy 11.0%, France 10.0% | 2021-12-22 | 36 | 309 | Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249 | |
| JG.3 | United States of America 19.0%, France 13.0%, Spain 10.0%, Canada 9.0%, United Kingdom 7.0% | 2021-07-16 | 61 | 9662 | Alias of XBB.1.9.2.5.1.3.3, S:L455F (G22927T), S:S704L, Europe, from #2231 | |
| JG.3.1 | United States of America 25.0%, Sweden 15.0%, Canada 8.0%, United Kingdom 8.0%, Denmark 8.0% | 2023-06-26 | 146 | 2007 | Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829 | |
| JG.3.2 | Canada 55.0%, United States of America 29.0%, Japan 11.0%, Australia 2.0%, France 1.0% | 2022-12-07 | 47 | 2167 | Alias of XBB.1.9.2.5.1.3.3.2, S:N450D, Canada, from #2376 | |
| EG.5.1.4 | United States of America 44.0%, Canada 17.0%, United Kingdom 7.0%, Spain 4.0%, France 4.0% | 2023-04-03 | 117 | 6941 | Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117 | |
| EG.5.1.6 | United States of America 48.0%, Canada 15.0%, United Kingdom 8.0%, France 4.0%, Spain 3.0% | 2022-10-07 | 24 | 5945 | Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394 | |
| HV.1 | United States of America 54.0%, Canada 26.0%, United Kingdom 2.0%, Sweden 2.0%, France 2.0% | 2022-10-18 | 11 | 39479 | Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA | |
| HV.1.1 | United States of America 63.0%, Canada 20.0%, Japan 4.0%, Switzerland 2.0%, United Kingdom 2.0% | 2023-08-15 | 19 | 1685 | Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#866 | |
| HV.1.9 | New_Zealand 77.0%, United States of America 12.0%, Australia 5.0%, Sweden 2.0%, Japan 1.0% | 2023-10-02 | 76 | 111 | Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand, from sars-cov-2-variants/lineage-proposals#957 | |
| HV.2 | Canada 45.0%, United States of America 21.0%, United Kingdom 10.0%, Israel 5.0%, Australia 4.0% | 2023-09-11 | 76 | 187 | Alias of XBB.1.9.2.5.1.6.2, S:L455F (G22927T), Canada, from sars-cov-2-variants/lineage-proposals#537 | |
| EG.5.1.7 | United Kingdom 38.0%, United States of America 28.0%, Ireland 6.0%, Luxembourg 5.0%, Canada 4.0% | 2023-07-14 | 14 | 247 | Alias of XBB.1.9.2.5.1.7, S:K278N | |
| EG.5.1.8 | United States of America 17.0%, China 16.0%, South_Korea 10.0%, Japan 8.0%, Singapore 7.0% | 2022-12-31 | 51 | 2922 | Alias of XBB.1.9.2.5.1.8, S:L455F (G22927T), China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537 | |
| JR.1.1 | United States of America 24.0%, United Kingdom 13.0%, Greece 12.0%, France 7.0%, Spain 7.0% | 2023-08-14 | 7 | 630 | Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C), from sars-cov-2-variants/lineage-proposals#537 | |
| EG.5.1.16 | United States of America 77.0%, Canada 12.0%, Sweden 2.0%, Japan 1.0%, France 1.0% | 2023-04-16 | 1712 | 2137 | Alias of XBB.1.9.2.5.1.16, ORF1b:A2431V, from sars-cov-2-variants/lineage-proposals#899 | |
| EG.6.1 | United States of America 39.0%, Canada 25.0%, Israel 8.0%, United Kingdom 5.0%, France 4.0% | 2023-02-14 | 69 | 4414 | Alias of XBB.1.9.2.6.1, S:F456L (T22928C), Israel/Japan/Canada, from #1950 | |
| EG.10.1.1 | United Kingdom 17.0%, Germany 13.0%, France 11.0%, United States of America 9.0%, Spain 8.0% | 2023-06-07 | 1245 | 1424 | Alias of XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S | |
| EG.11 | Spain 22.0%, Japan 22.0%, United States of America 17.0%, France 8.0%, Singapore 8.0% | 2022-10-18 | 38 | 166 | Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia, from sars-cov-2-variants/lineage-proposals#523 | |
| EG.14 | United States of America 20.0%, France 9.0%, Spain 8.0%, Japan 7.0%, United Kingdom 7.0% | 2023-01-08 | 673 | 642 | Alias of XBB.1.9.2.14, Orf1b:K1383R, from #2274 |