Comma separated string of metadata columns to annotate catchment trees with, can then be displayed in the report.
Default:
lineage,country
Usage:
--tree-annotations {$LIST} or -ta {$LIST}
Maximum number of sequences allowed in a given catchment tree. Catchments with more than this will be summarised in a table rather than a tree.
Default:
500
Usage:
--max-tree-size {$NUMBER} or -mt {$NUMBER}