Timeline options (report option 5)

How to customise the timelines produced in the civet report.

Timelines of queries in each catchment area will be produced

-td/--timeline-dates

Comma separated string of metadata columns containing date information to plot on the timeline. Must be in the format YYYY-MM-DD

Default:
--input-date-column or --background-date-column

See Input column configuration and Background column configuration

Usage:
--timeline-dates {$LIST} or -td {$LIST}

-tgc/--timeline-group-column

Header of background or input metadata to group sequences by on the timeline, so that dates for multiple sequences can appear on the same line. NB these will still be grouped by catchment area primarily, so this will only group sequences that are in the same catchment.

Default:
--input-display-column

Usage:
--timeline-group-column {$HEADER} or -tgc {$HEADER}