B.1.1.7 2023-01-31



Description

Initially a UK lineage, associated with a variant of concern with N501Y, P681H and numerous other mutations. Evidence of having higher transmissibility than other lineage resulting in rapid growth in the UK and internationally.
This webpage is generated using publically available sequence data from GISAID, shared by international sequencing efforts.

Table 1 | Summary of B.1.1.7 data

Statistic Information
Countries with sequences 183
Sequence count 1111131
Countries United Kingdom 261961, United States of America 223324, Germany 105347, Sweden 66919, Denmark 62817, Japan 51421, Canada 36575, Netherlands 29934, Spain 29029, France 28968, Italy 24204, Switzerland 21056, Belgium 20888, Poland 15521, Ireland 14697, Norway 14211, Slovenia 8392, Israel 7125, Finland 6630, Greece 5386, Portugal 4756, Czech Republic 4616, Luxembourg 4599, Lithuania 4597, Slovakia 4522, Latvia 4392, Croatia 4112, India 3974, Estonia 3139, Austria 3128, Bulgaria 3070, Philippines 2578, Canary Islands 2239, Thailand 2063, Turkey 2061, Romania 1801, Mexico 1742, Brazil 1291, Kenya 990, Puerto Rico 927, South Korea 865, Cambodia 811, Lebanon 755, Cyprus 710, Pakistan 640, Iceland 568, Aruba 551, Australia 549, Mongolia 464, Sint Maarten 435, Ghana 410, Russia 394, Argentina 373, United Arab Emirates 372, Curaçao 316, North Macedonia 295, South Africa 264, Ecuador 260, Martinique 248, Nigeria 245, Senegal 218, Qatar 217, Gibraltar 210, Iran 210, Chile 201, Jamaica 201, Singapore 186, Kazakhstan 186, Panama 183, Bonaire 183, Taiwan 171, Costa Rica 171, Reunion 168, Gabon 149, New Zealand 144, Jordan 138, Oman 133, Iraq 130, Angola 129, Guadeloupe 126, U.S. Virgin Islands 124, Sri Lanka 122, Tunisia 121, Republic of Serbia 120, Georgia 116, Ukraine 115, Cote d'Ivoire 114, Malta 113, Colombia 107, Morocco 107, Guam 105, Bangladesh 98, Bahrain 83, Indonesia 82, Hong Kong 77, Djibouti 75, The Bahamas 75, Bosnia and Herzegovina 75, Benin 64, French Guiana 60, Montenegro 54, Afghanistan 50, Gambia 48, Suriname 46, Kyrgyzstan 42, Egypt 41, Guinea 37, Togo 34, Malaysia 34, Saint Lucia 32, Moldova 32, Cayman Islands 30, Hungary 30, Kuwait 28, Republic of the Congo 27, Albania 27, Belize 27, Palestine 27, Kosovo 26, China 26, Madagascar 26, Guinea-Bissau 26, Ethiopia 25, Algeria 25, Dominican Republic 24, Peru 24, Saudi Arabia 20, Guatemala 18, Uganda 17, Cabo Verde 16, Cameroon 16, Barbados 15, Liechtenstein 14, Maldives 13, Vietnam 13, Belarus 12, Venezuela 12, Armenia 11, Central African Republic 10, Wallis and Futuna Islands 10, Antigua and Barbuda 9, Rwanda 8, Mauritius 7, Paraguay 7, Andorra 7, Somalia 6, Zambia 6, Democratic Republic of the Congo 6, Eswatini 6, Turks and Caicos Islands 6, Mauritania 5, Malawi 5, Trinidad and Tobago 5, El Salvador 5, Liberia 4, Fiji 4, Libya 4, Sao Tome and Principe 4, Nicaragua 3, Northern Mariana Islands 3, Azerbaijan 3, Seychelles 3, Haiti 3, Niger 3, Monaco 3, Uzbekistan 3, Nepal 2, Montserrat 2, Anguilla 2, South Sudan 2, Mayotte 2, Mozambique 2, Myanmar 2, Burkina Faso 1, Crimea 1, Sudan 1, Bermuda 1, Faroe Islands 1, Burundi 1, Honduras 1, Botswana 1, Guyana 1, Dominica 1
First detected United Kingdom
Earliest sample date 2020-09-01
Defining SNPs aa:orf1ab:T1001I
aa:orf1ab:A1708D
aa:orf1ab:I2230T
del:11288:9
del:21765:6
del:21991:3
aa:S:N501Y
aa:S:A570D
aa:S:P681H
aa:S:T716I
aa:S:S982A
aa:S:D1118H
aa:Orf8:Q27*
aa:Orf8:R52I
aa:Orf8:Y73C
aa:N:D3L
aa:N:S235F

Figure 1 | Cumulative sequence count over time B.1.1.7

Bars show the number of new sequences on GISAID over time, binned by epi-week. The line shows the cumulative number of sequences over time.


Figure 2 | Date of earliest_B.1.1.7 detected

Schematic map showing the date of the first sequence sample date in each country containing the lineage. Darker countries have earlier first sample dates.


Figure 3 | Map of B.1.1.7 sequence counts

Map showing the logged number of sequences of the variant in each country. Countries with more sequences are shown in darker colours.


Figure 4 | Sequence count per country B.1.1.7

The number of sequences of the lineage recorded in each country. The height of the bar is the logged number and the numbers above the bar are the raw counts.


Figure 5 | Frequency B.1.1.7 in sequences produced since first new variant reported per country

The overall frequency of the lineage, defined as the number of sequences assigned the lineage divided by the total number of sequences from that country in the time since the variant was first sequenced in that country.


Figure 6 | B.1.1.7 count per continent

Seven day rolling average of sequence counts per continent. Please note that recent declines may be due to delay in reporting rather than reflecting a change in the underlying virus population.


Figure 7 | Rolling average B.1.1.7 frequency per continent

Seven day rolling average of frequency of sequences of the lineage of interest. Frequency is calculated by dividing the number of sequences of the lineage of interest by the total sequences for each continent for each day.


Figure 9 | Air traffic by destination B.1.1.7

The number of ticketed origin-to-destination journeys from London airports to countries outside the United Kingdom during October 2020.

Colours indicate numbers of published genomes of B.1.1.7 deposited on GISAID. Grey bars indicate countries that have reported the presence of the variant but have not yet published B.1.1.7 sequences on GISAID. White bars indicate countries with no reports of B.1.1.7.

Flight data come from the International Air Transportation Association that capture anonymized, passenger-level flight itinerary data, comprising both commercial flights and scheduled charter flights. These data account for ~90% of global air travel volumes, with the remaining volumes modelled using market intelligence. We report data from destinations including >5,000 passengers.

Note that flight data reflects final-destination on a booked journey, we cannot account for instances where two separate tickets were purchased.



Table 2 | Reported B.1.1.7 imports | Country count: 114




Country Earliest report Date local transmission Local transmission Method of surveillance Source
United States of America 2020-12-27 2020-12-27 1 SGTF https://eu.usatoday.com/story/news/health/2020/12/29/colorado-reports-first-known-us-case-new-covid-strain-uk/4079697001/ | https://twitter.com/K_G_Andersen/status/1344825028370567169/photo/1
Denmark 2020-11-14 1 community_sequencing https://www.bbc.co.uk/news/world-55382212
Australia 2020-12-20 0 travellers https://www.dw.com/en/covid-19-more-countries-detect-mutated-uk-coronavirus-variant/a-56009203
United Kingdom 2020-09-20 2020-09-20 1 community_sequencing https://virological.org/t/preliminary-genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-the-uk-defined-by-a-novel-set-of-spike-mutations/563
Turkey 2021-01-01 2021-01-22 1 community_sequencing https://www.dailysabah.com/turkey/virus-variants-spread-to-23-provinces-in-turkey-amid-warnings/news; https://twitter.com/CoronaTurkey/status/1352612954454298624 | https://www.cnnturk.com/video/turkiye/son-dakika-haberi-bakan-koca-acikladi-15-kiside-mutasyonlu-virus-ingiltereden-girisler-tamamen-durduruldu-video
Belgium 2020-12-20 2021-01-12 1 https://www.brusselstimes.com/news/belgium-all-news/146288/netherlands-bans-flights-from-uk-over-new-covid-mutation-found-coronavirus-van-ranst-who/
Canada 2020-12-26 2020-12-26 1 https://www.cbc.ca/news/canada/toronto/ontario-confirms-first-cases-covid19-uk-variant-1.5855361
Chile 2020-12-22 2021-01-13 1 travellers https://www.reuters.com/article/uk-health-coronavirus-britain-variants-f/chile-records-first-case-of-british-variant-of-coronavirus-health-ministry-idUSKBN2931CS & https://twitter.com/Tele13_Radio/status/1349452813760389123?s=20
China 2020-12-04 2021-01-19 1 community_sequencing https://www.bjnews.com.cn/detail/161113300215924.html | http://weekly.chinacdc.cn/en/article/doi/10.46234/ccdcw2020.270 | https://www.globaltimes.cn/page/202101/1211644.shtml
Finland 2020-12-28 0 travellers https://yle.fi/uutiset/osasto/news/new_uk_variant_covid_strain_detected_in_finland/11716211
France 2020-12-19 2021-01-06 1 https://www.aljazeera.com/news/2020/12/26/france-confirms-first-case-of-new-coronavirus-variant | https://cnnphilippines.com/news/2021/1/6/Hong-Kong-detects-UK-COVID-19-variant-from-Manila-outbound-passenger-.html
Germany 2020-11-27 2020-11-27 1 travellers https://www.ms.niedersachsen.de/startseite/service_kontakt/presseinformationen/variante-des-corona-virus-aus-grossbritannien-erstmals-in-niedersachsen-nachgewiesen-195841.html
Iceland 2020-12-21 0 travellers https://icelandmonitor.mbl.is/news/news/2020/12/30/eleven_recent_cases_of_british_variant_of_coronavir/
India 2020-12-18 0 travellers https://www.republicworld.com/india-news/general-news/maharashtra-8-patients-detected-with-uk-variant-of-covid-19-5-from-mumbai.html
Ireland 2020-12-25 2020-12-29 1 travellers https://www.independent.ie/world-news/coronavirus/new-uk-variant-of-covid-19-confirmed-in-ireland-while-1025-new-cases-and-two-further-deaths-confirmed-39900087.html | https://www.thejournal.ie/uk-strain-coronavirus-b117-ireland-third-wave-5314440-Jan2021/
Israel 2020-12-23 2021-01-01 1 https://www.timesofisrael.com/health-officials-fear-mutant-strain-spreading-as-they-examine-dozens-of-tests/ | https://menafn.com/1101373506/Mutant-COVID-19-variant-affects-18-more-people-in-Israel&source=30
Italy 2020-12-20 2020-12-23 1 https://news.sky.com/story/covid-19-new-strain-found-in-denmark-netherlands-and-australia-says-who-12169262 | https://www.aa.com.tr/en/europe/italy-detects-new-case-of-coronavirus-variant/2086553
Japan 2020-12-25 2021-01-19 1 community_sequencing https://www.japantimes.co.jp/news/2021/01/19/national/japan-uk-coronavirus-variant/ | https://www.theguardian.com/world/2020/dec/25/japan-reports-cases-coronavirus-variant-spreading-across-uk
Jordan 2020-12-27 0 travellers https://medicalxpress.com/news/2020-12-jordan-coronavirus-variant-cases-minister.html
Lebanon 2020-12-21 0 travellers https://www.aljazeera.com/news/2020/12/26/france-confirms-first-case-of-new-coronavirus-variant
Malta 2020-12-19 0 travellers https://timesofmalta.com/articles/view/uk-covid-19-variant-detected-in-malta.841925
Netherlands 2020-12-20 2020-12-28 1 https://www.bbc.co.uk/news/world-55382212 | https://www.rivm.nl/en/news/spread-of-uk-coronavirus-variant-in-netherlands
Norway 2020-12-27 2021-01-23 1 community_sequencing https://www.forbes.com/sites/davidnikel/2021/01/23/oslo-shuts-down-as-coronavirus-mutation-strikes-norway/?sh=921026f1faee; https://news.sky.com/story/covid-19-france-discovers-its-first-case-of-the-new-coronavirus-variant-after-frenchman-travelled-from-london-12172620
Pakistan 2020-12-29 0 travellers https://www.hindustantimes.com/world-news/first-confirmed-case-of-new-covid-19-strain-detected-in-pakistan/story-TFLSMYU6WRJ8yToNQfIeyJ.html
Portugal 2020-12-27 2020-12-28 1 travellers https://www.sapo.pt/noticias/atualidade/covid-19-nova-estirpe-e-recente-em-portugal-e_5ff221926def8e5d02b29e94;https://www.portugalresident.com/madeira-registers-first-18-cases-of-new-covid-variant-one-from-lisbon-area/
Singapore 2020-12-23 0 travellers https://www.straitstimes.com/singapore/singapore-confirms-1-imported-patient-with-potentially-more-contagious-covid-19-strain
South Korea 2020-12-22 0 travellers https://www.dailymail.co.uk/news/article-9091763/S-Korea-accelerate-virus-vaccine-efforts-U-K-variant-detected.html
Spain 2020-12-26 2021-01-08 1 https://www.theguardian.com/world/2020/dec/26/spain-and-sweden-report-cases-of-uk-covid-variant
Sweden 2020-12-20 2021-01-19 1 community_sequencing https://www.folkhalsomyndigheten.se/smittskydd-beredskap/utbrott/aktuella-utbrott/nya-varianter-av-sars-cov-2/; https://www.svt.se/nyheter/lokalt/sormland/fall-av-den-brittiska-virusvarianten-upptack-i-sormland
Taiwan 2020-12-30 0 travellers https://www.scmp.com/news/china/science/article/3115884/taiwan-reports-its-first-case-mutant-covid-19-strain-found
United Arab Emirates 2020-12-29 0 travellers https://www.khaleejtimes.com/coronavirus-pandemic/new-covid-strain-in-uae-all-we-know-so-far
Switzerland 2020-12-24 2021-01-05 1 https://www.bag.admin.ch/bag/fr/home/das-bag/aktuell/medienmitteilungen.msg-id-81829.html | https://www.swissinfo.ch/eng/more-variant-covid-19-carriers-detected-in-switzerland/46262070
Brazil 2020-12-21 2021-01-18 1 SGTF https://www.dropbox.com/s/y99g4uw6s7za01c/CADDE%20genomic%20report%2031%20Dec%202020.pdf?dl=0
Vietnam 2020-12-24 0 travellers https://www.telegraph.co.uk/news/2021/01/02/vietnam-reports-first-case-new-coronavirus-variant-woman-returning/
Luxembourg 2020-12-29 0 travellers https://covid19.public.lu/fr/actualite-covid-19/communiques/2021/01/02-covid-variante.html
New Zealand 2020-12-25 2021-02-15 1 travellers https://www.rnz.co.nz/news/national/433973/covid-19-update-19-new-imported-cases-in-past-three-days
Hong Kong 2020-12-23 0 travellers https://uk.reuters.com/article/us-health-coronavirus-hongkong/uk-coronavirus-variant-likely-found-in-hong-kong-as-city-secures-vaccine-supplies-idUKKBN28X1E1
Cyprus 2020-12-20 0 travellers https://cyprus-mail.com/2021/01/03/coronavirus-new-fast-spreading-british-strain-found-in-cyprus/
Thailand 2021-01-03 0 travellers https://www.thestar.com.my/aseanplus/aseanplus-news/2021/01/03/thailand-finds-new-strain-of-covid-19-from-uk-in-four-britons
Greece 2021-01-03 0 travellers https://www.keeptalkinggreece.com/2021/01/03/covid19-mutated-strain-greece-travelers-uk/#.X_IT0OugNCg.twitter
Jamaica 2020-12-21 0 travellers https://www.thestkittsnevisobserver.com/new-corona-strain-arrives-in-jamaica-on-last-uk-flight/
Austria 2021-01-04 2021-01-18 1 community_sequencing https://www.sn.at/panorama/wissen/live-corona-mutationen-sind-in-oesterreich-angekommen-97891537 | https://www.ots.at/presseaussendung/OTS_20210118_OTS0147/anschober-ergebnisse-der-vollsequenzierungen-bestaetigen-b117-verdacht-bei-grossteil-der-geprueften-faelle
Iran 2021-01-05 0 travellers https://www.jpost.com/breaking-news/iran-finds-first-case-of-new-virus-variant-in-traveler-from-uk-654329
Philippines 2020-12-22 https://cnnphilippines.com/news/2021/1/6/Hong-Kong-detects-UK-COVID-19-variant-from-Manila-outbound-passenger-.html
Oman 2021-01-05 0 travellers https://www.reuters.com/article/us-health-coronavirus-oman-idUSKBN29A1G9
Romania 2021-01-08 2021-01-08 1 community_sequencing https://www.barrons.com/news/romania-confirms-first-case-of-new-uk-virus-strain-01610126705?tesla=y
Slovakia 2021-01-05 2021-01-05 1 community_sequencing https://spectator.sme.sk/c/22567045/new-strain-of-coronavirus-from-the-uk-confirmed-in-slovakia.html
Russia 2021-01-10 0 travellers https://www.rferl.org/a/russia-confirms-first-case-of-new-coronavirus-strain/31041057.html
Mexico 2020-12-29 0 travellers https://www.vallartadaily.com/new-coronavirus-strain-first-seen-in-britain-confirmed-in-mexico/
Ecuador 2021-01-06 0 travellers https://www.aa.com.tr/en/americas/ecuador-records-first-case-of-new-coronavirus-variant/2106621
Sri Lanka 2021-01-02 https://www.newsfirst.lk/2021/02/12/uk-covid-strain-found-in-sri-lanka-dr-chandima-jeewandara/
Malaysia 2020-12-28 0 travellers https://www.malaymail.com/news/malaysia/2021/01/11/uk-variant-of-covid-19-has-reached-malaysia-dr-noor-hisham-confirms/1939483
Czech Republic 2021-01-01 GISAIDTravellerToGermanyEPI_ISL_824943
Hungary 2021-01-07 2021-01-07 1 community_sequencing GISAID
Argentina 2021-01-15 2021-02-15 1 community_sequencing https://twitter.com/ProyectoPAIS4/status/1360588381525323778;https://t.co/kSxRa78t6z?amp=1
Ghana 2021-01-18 0 travellers https://twitter.com/gordon_awandare/status/1351235484085846019
Peru 2020-12-31 2020-12-31 1 community_sequencing https://www.reuters.com/article/health-coronavirus-peru/peru-confirms-case-of-british-variant-of-coronavirus-idUSL1N2JJ26C
Morocco 2021-01-18 0 travellers https://www.dailysabah.com/world/mid-east/morocco-detects-1st-case-of-uk-coronavirus-variant-bans-flights
Poland 2021-01-20 2021-01-20 1 community_sequencing https://twitter.com/genXone_SA/status/1351990700259368965
Trinidad and Tobago 2021-01-21 0 travellers https://twitter.com/CVFCarrington/status/1352569760278523906/photo/1
Latvia 2021-01-12 0 travellers https://bnn-news.com/four-more-cases-of-british-covid-19-variation-found-in-latvia-220958
United Arab Emirates 2020-11-16 0 travellers https://www.reuters.com/article/us-health-coronavirus-emirates/uae-reports-limited-number-of-cases-of-new-coronavirus-variant-idUKKBN2931RJ?edition-redirect=uk
Bulgaria 2021-01-23 2021-02-03 1 community_sequencing https://sofiaglobe.com/2021/02/03/bulgarias-health-minister-cases-of-suspected-uk-variant-of-covid-19-rising/; https://sofiaglobe.com/2021/01/23/professor-8-cases-of-uk-variant-of-covid-19-found-in-bulgaria/; https://www.thestar.com.my/news/world/2021/01/23/bulgaria-confirms-first-cases-of-new-coronavirus-variant
Nigeria 2020-12-29 2020-12-29 1 community_sequencing https://twitter.com/acegid/status/1354013208990912512
Gambia 2021-01-14 0 travellers https://www.reuters.com/article/uk-health-coronavirus-gambia-idUSKBN29K0OF
Mayotte 2021-01-09 2021-01-09 1 community_sequencing GISAID
Saint Lucia 2020-12-17 2020-12-17 1 community_sequencing http://www.loopslu.com/content/multiple-cases-uk-covid-variant-confirmed-st-lucia
South Africa 2021-01-28 2021-02-03 1 community_sequencing https://twitter.com/Tuliodna/status/1354737669914423298?s=20
Senegal 2021-01-28 0 community_sequencing https://www.reuters.com/article/health-coronavirus-senegal/update-2-senegal-confirms-presence-of-uk-coronavirus-variant-idUSL1N2K30W7
Kuwait 2021-01-19 0 travellers https://www.reuters.com/article/health-coronavirus-kuwait/kuwait-registers-first-cases-of-new-virus-variant-idUSL1N2JU1CP
Georgia 2021-01-04 0 travellers http://www.businessworld.in/article/Georgia-confirms-first-case-of-UK-linked-coronavirus-strain/04-01-2021-361501/
Slovenia 2021-01-25 2021-01-25 1 SGTF https://www.gov.si/en/news/2021-01-27-according-to-the-first-analyses-the-uk-coronavirus-variant-has-not-spread-widely-in-slovenia/
Bangladesh 2021-12-31 community_sequencing GISAID
Barbados 2021-01-26 2021-01-26 1 community_sequencing https://gisbarbados.gov.bb/blog/carpha-confirms-uk-covid-19-variant-in-barbados/#:~:text=The%20Caribbean%20Public%20Health%20Agency%20(CARPHA)%20has%20confirmed
Cayman Islands 2021-01-26 0 travellers https://caymannewsservice.com/2021/01/uk-covid-variant-confirmed-in-travellers/#:~:text=(CNS):%20A%20selection%20of%20COVID-19%20positive%20samples%20were
Croatia 2021-01-20 2021-01-20 1 community_sequencing https://www.telegram.hr/politika-kriminal/potvrdena-prva-tri-slucaja-britanskog-soja-koronavirusa-u-hrvatskoj/
Uruguay 2020-12-20 0 travellers https://www.republica.com.uy/hallaron-la-variante-britanica-del-virus-sars-cov-2-en-uruguay-id810761/
Dominican Republic 2021-01-15 0 travellers https://dominicantoday.com/dr/local/2021/01/15/new-covid-19-strain-confirmed-to-arrive-in-dominican-republic-from-london/
Saudi Arabia 2021-01-12 0 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---12-january-2021
Uzbekistan 2021-02-09 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---09-february-2021
Cambodia 2021-02-09 1 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---09-january-2021
Lithuania 2021-02-09 1 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---09-january-2021
Iraq 2021-02-15 2021-02-15 1 community_sequencing https://www.france24.com/en/live-news/20210215-iraq-detects-new-uk-based-strain-reimposes-partial-lockdown
Bosnia and Herzegovina 2021-02-09 0 community_sequencng http://www.sarajevotimes.com/new-variant-of-coronavirus-discovered-in-bosnia-and-herzegovina-as-well/
Nepal 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Bhutan 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Estonia 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Aruba 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Kosovo 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Guadeloupe 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Liechtenstein 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
North Macedonia 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Serbia 2021-02-16 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---16-february-2021
Algeria 2021-02-25 community_sequencing https://nationalpost.com/pmn/health-pmn/algeria-detects-first-two-cases-of-uk-coronavirus-variant
Angola 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Azerbaijan 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Bahrain 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Belarus 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Belize 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Brunei 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Costa Rica 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Curaçao 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Democratic Republic of the Congo 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Indonesia 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Libya 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Mauritania 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
New Caledonia 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Puerto Rico 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Reunion 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Rwanda 2021-03-23 1 community_sequencing GISAID
Saint Barthélemy 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Saint Martin 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Tunisia 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021
Ukraine 2021-03-23 community_sequencing https://www.who.int/publications/m/item/weekly-epidemiological-update---23-march-2021

Table 3 | Raw data for figures




Country Earliest sequence Number of variant sequences Total sequences since first variant sequence
United States Of America 2020-09-01 231125 4064418
Denmark 2020-11-09 63019 611502
United Kingdom 2020-09-20 262136 2744397
Belgium 2020-11-30 20995 161846
Canada 2020-11-08 36587 428034
Spain 2020-10-14 29058 188100
Puerto Rico 2021-01-22 931 13174
Iraq 2020-12-27 130 912
Poland 2020-12-22 15540 86299
Lithuania 2021-02-02 9964 37216
Croatia 2021-01-20 4112 40115
Italy 2020-10-09 25680 151104
Austria 2020-11-23 3129 52514
Japan 2020-12-01 51452 520655
Brazil 2020-12-21 1291 192171
France 2020-09-03 30698 495776
Turkey 2020-12-24 2061 99468
Switzerland 2020-11-09 21093 143137
Colombia 2021-03-05 107 15475
South Africa 2021-01-05 264 34773
Netherlands 2020-11-29 30033 149397
Slovakia 2020-11-30 4523 43502
India 2020-10-27 3975 179478
Lebanon 2020-12-29 755 1901
Australia 2020-11-30 553 144343
Ireland 2020-10-28 14737 91632
Guam 2021-02-21 105 881
Sweden 2020-10-08 67143 227536
Finland 2020-12-18 6631 43405
Bulgaria 2020-12-13 3070 20322
Aruba 2021-01-20 551 3943
Israel 2020-12-16 7184 113336
Slovenia 2020-09-14 8393 78885
Estonia 2020-12-25 3166 14498
Czech Republic 2021-01-04 4616 54270
Germany 2020-11-30 105671 858922
Greece 2020-12-11 5389 25746
Thailand 2020-12-21 2063 28720
Norway 2020-12-09 14268 72376
Taiwan 2020-11-10 171 2524
Ghana 2020-11-20 410 3052
Portugal 2020-11-09 4780 41819
Bangladesh 2020-12-31 98 5464
South Korea 2020-12-14 866 79721
Gabon 2020-12-28 149 520
Kenya 2020-09-21 990 7498
North Macedonia 2021-01-04 295 822
Qatar 2020-12-27 217 3985
Singapore 2020-12-08 190 28062
Russia 2020-12-25 394 52978
Indonesia 2021-01-05 82 42688
Latvia 2021-01-12 4421 25808
Chile 2020-12-22 201 37110
Nepal 2021-04-14 2 2861
Philippines 2020-12-10 2580 22326
Tunisia 2021-01-27 121 1061
Bahrain 2021-01-21 83 9719
Romania 2020-10-11 1803 18178
Mauritania 2021-02-18 5 52
Ukraine 2021-02-18 115 1250
Mexico 2020-12-31 1773 76489
Luxembourg 2020-12-24 4604 46100
Cambodia 2021-02-03 811 3757
Kazakhstan 2021-03-02 186 1348
Pakistan 2020-12-25 640 4489
Sri Lanka 2021-01-02 410 2773
Georgia 2020-11-14 121 2618
Curaçao 2021-01-23 316 2113
Reunion 2021-01-18 170 17651
Ethiopia 2021-01-23 25 515
Kyrgyzstan 2021-02-28 42 238
Mongolia 2021-03-08 464 1567
Angola 2021-01-15 130 806
Cyprus 2020-12-09 711 2414
United Arab Emirates 2020-10-01 375 985
Republic Of Serbia 2020-12-13 120 1852
Jordan 2020-12-20 138 883
Burkina Faso 2021-01-16 1 71
Guinea 2021-01-26 37 480
Argentina 2020-12-21 374 14865
Saudi Arabia 2021-04-04 20 620
New Zealand 2020-12-16 144 28306
Ecuador 2021-01-05 260 7395
Ivory Coast 2020-12-07 114 705
Dominican Republic 2020-12-27 24 2344
Nigeria 2020-09-16 245 4572
Kuwait 2020-12-31 28 638
Somalia 2021-02-28 6 12
Djibouti 2021-02-12 75 777
Gambia 2021-01-06 48 577
The Bahamas 2021-03-18 75 226
Gibraltar 2020-12-15 210 2337
Morocco 2021-01-08 107 1464
Panama 2021-03-25 186 5054
Central African Republic 2021-01-20 10 63
Kosovo 2021-01-05 26 1569
Guadeloupe 2021-01-22 126 2122
Malawi 2020-11-25 5 944
Hong Kong 2020-12-06 77 12626
Egypt 2021-03-01 41 1306
Iceland 2020-12-02 579 7821
Zambia 2020-12-01 6 873
Paraguay 2021-02-28 7 2269
Oman 2020-12-22 133 429
Saint Lucia 2020-12-17 32 175
Republic Of Congo 2021-02-25 28 330
Guatemala 2021-03-11 18 3619
Togo 2021-01-12 34 613
Bosnia And Herzegovina 2020-12-25 75 1331
Rwanda 2021-01-11 8 467
Malta 2021-03-25 113 707
Democratic Republic Of The Congo 2021-01-28 6 469
Costa Rica 2021-02-22 171 8727
Cameroon 2021-01-26 16 902
Sudan 2021-03-04 1 236
Liberia 2021-04-04 4 84
Belarus 2021-02-23 14 302
Nicaragua 2021-05-01 3 441
Senegal 2020-09-22 218 2514
Cayman Islands 2020-12-15 30 90
Albania 2020-12-10 27 54
Iran 2020-10-14 210 2143
Montenegro 2021-01-17 54 876
Andorra 2021-06-07 7 196
China 2021-01-17 26 10488
Benin 2021-01-30 66 1102
Peru 2020-12-31 24 41640
Liechtenstein 2021-01-21 14 1092
Malaysia 2020-12-28 34 32989
Trinidad And Tobago 2021-03-23 5 2233
Madagascar 2021-03-15 26 354
Jamaica 2020-12-21 201 2286
Armenia 2021-03-18 11 57
Uganda 2021-03-25 17 796
Belize 2021-01-29 27 888
Hungary 2021-01-06 30 291
Venezuela 2021-03-18 12 698
Vietnam 2021-01-30 13 6849
Azerbaijan 2021-02-01 3 57
Moldova 2021-01-27 32 749
Barbados 2020-12-31 15 145
Eswatini 2021-06-02 6 748
Algeria 2021-02-17 25 520
Fiji 2020-12-28 4 475
Haiti 2021-05-19 3 333
Suriname 2021-02-18 46 871
Libya 2021-02-17 4 107
Niger 2021-01-09 3 91
Palestine 2021-02-05 27 35
South Sudan 2021-03-02 2 148
Afghanistan 2021-03-21 50 77
Faroe Islands 2021-03-08 1 1
Burundi 2021-05-27 1 72
Mayotte 2021-01-13 2 1061
Uzbekistan 2021-06-25 3 92
Honduras 2021-04-23 1 185
El Salvador 2021-04-29 5 591
Mozambique 2021-04-21 2 713
Botswana 2021-05-15 1 2618
Guyana 2021-03-31 1 125
Myanmar 2021-05-28 2 81

Data source and processing

The data on this page is recent as of 2023-01-31, 22:14 GMT. All SARS-CoV-2 sequences were downloaded from GISAID and genomes were de-duplicated based on GISAID sequence name – note that the publically available metadata may not fully allow us to de-duplicate by patient. Full data processing pipeline found here. The sequences were then assigned lineages with pangolin 3.1.20, pangoLEARN version 2022-02-02.

Pangolin assigns B.1.1.7 to sequences with at least 5 of the 17 defining B.1.1.7 SNPs – defined here.

Caveat: Most locations outside the original focus have not reported sustained transmission and many cases have known travel links to the focal location. Increasing numbers of international cases is currently likely due to increased surveillance and vigilance.

Acknowledgements

Created by: Áine O'Toole and Verity Hill, Rambaut Group, University of Edinburgh. Flight volume data from Kamran Khan, Isaac Bogoch, Alexander Watts, Oliver Pybus, Moritz Kraemer. Sequences sourced from GISAID, full acknowledgements table here.

We have a publication in Wellcome Open Research here describing this web tracker.