B.1.1.7 2023-01-31
Description
Table 1 | Summary of B.1.1.7 data
Statistic | Information |
---|---|
Countries with sequences | 183 |
Sequence count | 1111131 |
Countries | United Kingdom 261961, United States of America 223324, Germany 105347, Sweden 66919, Denmark 62817, Japan 51421, Canada 36575, Netherlands 29934, Spain 29029, France 28968, Italy 24204, Switzerland 21056, Belgium 20888, Poland 15521, Ireland 14697, Norway 14211, Slovenia 8392, Israel 7125, Finland 6630, Greece 5386, Portugal 4756, Czech Republic 4616, Luxembourg 4599, Lithuania 4597, Slovakia 4522, Latvia 4392, Croatia 4112, India 3974, Estonia 3139, Austria 3128, Bulgaria 3070, Philippines 2578, Canary Islands 2239, Thailand 2063, Turkey 2061, Romania 1801, Mexico 1742, Brazil 1291, Kenya 990, Puerto Rico 927, South Korea 865, Cambodia 811, Lebanon 755, Cyprus 710, Pakistan 640, Iceland 568, Aruba 551, Australia 549, Mongolia 464, Sint Maarten 435, Ghana 410, Russia 394, Argentina 373, United Arab Emirates 372, Curaçao 316, North Macedonia 295, South Africa 264, Ecuador 260, Martinique 248, Nigeria 245, Senegal 218, Qatar 217, Gibraltar 210, Iran 210, Chile 201, Jamaica 201, Singapore 186, Kazakhstan 186, Panama 183, Bonaire 183, Taiwan 171, Costa Rica 171, Reunion 168, Gabon 149, New Zealand 144, Jordan 138, Oman 133, Iraq 130, Angola 129, Guadeloupe 126, U.S. Virgin Islands 124, Sri Lanka 122, Tunisia 121, Republic of Serbia 120, Georgia 116, Ukraine 115, Cote d'Ivoire 114, Malta 113, Colombia 107, Morocco 107, Guam 105, Bangladesh 98, Bahrain 83, Indonesia 82, Hong Kong 77, Djibouti 75, The Bahamas 75, Bosnia and Herzegovina 75, Benin 64, French Guiana 60, Montenegro 54, Afghanistan 50, Gambia 48, Suriname 46, Kyrgyzstan 42, Egypt 41, Guinea 37, Togo 34, Malaysia 34, Saint Lucia 32, Moldova 32, Cayman Islands 30, Hungary 30, Kuwait 28, Republic of the Congo 27, Albania 27, Belize 27, Palestine 27, Kosovo 26, China 26, Madagascar 26, Guinea-Bissau 26, Ethiopia 25, Algeria 25, Dominican Republic 24, Peru 24, Saudi Arabia 20, Guatemala 18, Uganda 17, Cabo Verde 16, Cameroon 16, Barbados 15, Liechtenstein 14, Maldives 13, Vietnam 13, Belarus 12, Venezuela 12, Armenia 11, Central African Republic 10, Wallis and Futuna Islands 10, Antigua and Barbuda 9, Rwanda 8, Mauritius 7, Paraguay 7, Andorra 7, Somalia 6, Zambia 6, Democratic Republic of the Congo 6, Eswatini 6, Turks and Caicos Islands 6, Mauritania 5, Malawi 5, Trinidad and Tobago 5, El Salvador 5, Liberia 4, Fiji 4, Libya 4, Sao Tome and Principe 4, Nicaragua 3, Northern Mariana Islands 3, Azerbaijan 3, Seychelles 3, Haiti 3, Niger 3, Monaco 3, Uzbekistan 3, Nepal 2, Montserrat 2, Anguilla 2, South Sudan 2, Mayotte 2, Mozambique 2, Myanmar 2, Burkina Faso 1, Crimea 1, Sudan 1, Bermuda 1, Faroe Islands 1, Burundi 1, Honduras 1, Botswana 1, Guyana 1, Dominica 1 |
First detected | United Kingdom |
Earliest sample date | 2020-09-01 |
Defining SNPs | aa:orf1ab:T1001I aa:orf1ab:A1708D aa:orf1ab:I2230T del:11288:9 del:21765:6 del:21991:3 aa:S:N501Y aa:S:A570D aa:S:P681H aa:S:T716I aa:S:S982A aa:S:D1118H aa:Orf8:Q27* aa:Orf8:R52I aa:Orf8:Y73C aa:N:D3L aa:N:S235F |
Figure 1 | Cumulative sequence count over time B.1.1.7
Bars show the number of new sequences on GISAID over time, binned by epi-week. The line shows the cumulative number of sequences over time.
Figure 2 | Date of earliest_B.1.1.7 detected
Schematic map showing the date of the first sequence sample date in each country containing the lineage. Darker countries have earlier first sample dates.
Figure 3 | Map of B.1.1.7 sequence counts
Map showing the logged number of sequences of the variant in each country. Countries with more sequences are shown in darker colours.
Figure 4 | Sequence count per country B.1.1.7
The number of sequences of the lineage recorded in each country. The height of the bar is the logged number and the numbers above the bar are the raw counts.
Figure 5 | Frequency B.1.1.7 in sequences produced since first new variant reported per country
The overall frequency of the lineage, defined as the number of sequences assigned the lineage divided by the total number of sequences from that country in the time since the variant was first sequenced in that country.
Figure 6 | B.1.1.7 count per continent
Seven day rolling average of sequence counts per continent. Please note that recent declines may be due to delay in reporting rather than reflecting a change in the underlying virus population.
Figure 7 | Rolling average B.1.1.7 frequency per continent
Seven day rolling average of frequency of sequences of the lineage of interest. Frequency is calculated by dividing the number of sequences of the lineage of interest by the total sequences for each continent for each day.
Figure 9 | Air traffic by destination B.1.1.7
The number of ticketed origin-to-destination journeys from London airports to countries outside the United Kingdom during October 2020.
Colours indicate numbers of published genomes of B.1.1.7 deposited on GISAID. Grey bars indicate countries that have reported the presence of the variant but have not yet published B.1.1.7 sequences on GISAID. White bars indicate countries with no reports of B.1.1.7.
Flight data come from the International Air Transportation Association that capture anonymized, passenger-level flight itinerary data, comprising both commercial flights and scheduled charter flights. These data account for ~90% of global air travel volumes, with the remaining volumes modelled using market intelligence. We report data from destinations including >5,000 passengers.
Note that flight data reflects final-destination on a booked journey, we cannot account for instances where two separate tickets were purchased.
Table 2 | Reported B.1.1.7 imports | Country count: 114
Table 3 | Raw data for figures
Country | Earliest sequence | Number of variant sequences | Total sequences since first variant sequence |
---|---|---|---|
United States Of America | 2020-09-01 | 231125 | 4064418 |
Denmark | 2020-11-09 | 63019 | 611502 |
United Kingdom | 2020-09-20 | 262136 | 2744397 |
Belgium | 2020-11-30 | 20995 | 161846 |
Canada | 2020-11-08 | 36587 | 428034 |
Spain | 2020-10-14 | 29058 | 188100 |
Puerto Rico | 2021-01-22 | 931 | 13174 |
Iraq | 2020-12-27 | 130 | 912 |
Poland | 2020-12-22 | 15540 | 86299 |
Lithuania | 2021-02-02 | 9964 | 37216 |
Croatia | 2021-01-20 | 4112 | 40115 |
Italy | 2020-10-09 | 25680 | 151104 |
Austria | 2020-11-23 | 3129 | 52514 |
Japan | 2020-12-01 | 51452 | 520655 |
Brazil | 2020-12-21 | 1291 | 192171 |
France | 2020-09-03 | 30698 | 495776 |
Turkey | 2020-12-24 | 2061 | 99468 |
Switzerland | 2020-11-09 | 21093 | 143137 |
Colombia | 2021-03-05 | 107 | 15475 |
South Africa | 2021-01-05 | 264 | 34773 |
Netherlands | 2020-11-29 | 30033 | 149397 |
Slovakia | 2020-11-30 | 4523 | 43502 |
India | 2020-10-27 | 3975 | 179478 |
Lebanon | 2020-12-29 | 755 | 1901 |
Australia | 2020-11-30 | 553 | 144343 |
Ireland | 2020-10-28 | 14737 | 91632 |
Guam | 2021-02-21 | 105 | 881 |
Sweden | 2020-10-08 | 67143 | 227536 |
Finland | 2020-12-18 | 6631 | 43405 |
Bulgaria | 2020-12-13 | 3070 | 20322 |
Aruba | 2021-01-20 | 551 | 3943 |
Israel | 2020-12-16 | 7184 | 113336 |
Slovenia | 2020-09-14 | 8393 | 78885 |
Estonia | 2020-12-25 | 3166 | 14498 |
Czech Republic | 2021-01-04 | 4616 | 54270 |
Germany | 2020-11-30 | 105671 | 858922 |
Greece | 2020-12-11 | 5389 | 25746 |
Thailand | 2020-12-21 | 2063 | 28720 |
Norway | 2020-12-09 | 14268 | 72376 |
Taiwan | 2020-11-10 | 171 | 2524 |
Ghana | 2020-11-20 | 410 | 3052 |
Portugal | 2020-11-09 | 4780 | 41819 |
Bangladesh | 2020-12-31 | 98 | 5464 |
South Korea | 2020-12-14 | 866 | 79721 |
Gabon | 2020-12-28 | 149 | 520 |
Kenya | 2020-09-21 | 990 | 7498 |
North Macedonia | 2021-01-04 | 295 | 822 |
Qatar | 2020-12-27 | 217 | 3985 |
Singapore | 2020-12-08 | 190 | 28062 |
Russia | 2020-12-25 | 394 | 52978 |
Indonesia | 2021-01-05 | 82 | 42688 |
Latvia | 2021-01-12 | 4421 | 25808 |
Chile | 2020-12-22 | 201 | 37110 |
Nepal | 2021-04-14 | 2 | 2861 |
Philippines | 2020-12-10 | 2580 | 22326 |
Tunisia | 2021-01-27 | 121 | 1061 |
Bahrain | 2021-01-21 | 83 | 9719 |
Romania | 2020-10-11 | 1803 | 18178 |
Mauritania | 2021-02-18 | 5 | 52 |
Ukraine | 2021-02-18 | 115 | 1250 |
Mexico | 2020-12-31 | 1773 | 76489 |
Luxembourg | 2020-12-24 | 4604 | 46100 |
Cambodia | 2021-02-03 | 811 | 3757 |
Kazakhstan | 2021-03-02 | 186 | 1348 |
Pakistan | 2020-12-25 | 640 | 4489 |
Sri Lanka | 2021-01-02 | 410 | 2773 |
Georgia | 2020-11-14 | 121 | 2618 |
Curaçao | 2021-01-23 | 316 | 2113 |
Reunion | 2021-01-18 | 170 | 17651 |
Ethiopia | 2021-01-23 | 25 | 515 |
Kyrgyzstan | 2021-02-28 | 42 | 238 |
Mongolia | 2021-03-08 | 464 | 1567 |
Angola | 2021-01-15 | 130 | 806 |
Cyprus | 2020-12-09 | 711 | 2414 |
United Arab Emirates | 2020-10-01 | 375 | 985 |
Republic Of Serbia | 2020-12-13 | 120 | 1852 |
Jordan | 2020-12-20 | 138 | 883 |
Burkina Faso | 2021-01-16 | 1 | 71 |
Guinea | 2021-01-26 | 37 | 480 |
Argentina | 2020-12-21 | 374 | 14865 |
Saudi Arabia | 2021-04-04 | 20 | 620 |
New Zealand | 2020-12-16 | 144 | 28306 |
Ecuador | 2021-01-05 | 260 | 7395 |
Ivory Coast | 2020-12-07 | 114 | 705 |
Dominican Republic | 2020-12-27 | 24 | 2344 |
Nigeria | 2020-09-16 | 245 | 4572 |
Kuwait | 2020-12-31 | 28 | 638 |
Somalia | 2021-02-28 | 6 | 12 |
Djibouti | 2021-02-12 | 75 | 777 |
Gambia | 2021-01-06 | 48 | 577 |
The Bahamas | 2021-03-18 | 75 | 226 |
Gibraltar | 2020-12-15 | 210 | 2337 |
Morocco | 2021-01-08 | 107 | 1464 |
Panama | 2021-03-25 | 186 | 5054 |
Central African Republic | 2021-01-20 | 10 | 63 |
Kosovo | 2021-01-05 | 26 | 1569 |
Guadeloupe | 2021-01-22 | 126 | 2122 |
Malawi | 2020-11-25 | 5 | 944 |
Hong Kong | 2020-12-06 | 77 | 12626 |
Egypt | 2021-03-01 | 41 | 1306 |
Iceland | 2020-12-02 | 579 | 7821 |
Zambia | 2020-12-01 | 6 | 873 |
Paraguay | 2021-02-28 | 7 | 2269 |
Oman | 2020-12-22 | 133 | 429 |
Saint Lucia | 2020-12-17 | 32 | 175 |
Republic Of Congo | 2021-02-25 | 28 | 330 |
Guatemala | 2021-03-11 | 18 | 3619 |
Togo | 2021-01-12 | 34 | 613 |
Bosnia And Herzegovina | 2020-12-25 | 75 | 1331 |
Rwanda | 2021-01-11 | 8 | 467 |
Malta | 2021-03-25 | 113 | 707 |
Democratic Republic Of The Congo | 2021-01-28 | 6 | 469 |
Costa Rica | 2021-02-22 | 171 | 8727 |
Cameroon | 2021-01-26 | 16 | 902 |
Sudan | 2021-03-04 | 1 | 236 |
Liberia | 2021-04-04 | 4 | 84 |
Belarus | 2021-02-23 | 14 | 302 |
Nicaragua | 2021-05-01 | 3 | 441 |
Senegal | 2020-09-22 | 218 | 2514 |
Cayman Islands | 2020-12-15 | 30 | 90 |
Albania | 2020-12-10 | 27 | 54 |
Iran | 2020-10-14 | 210 | 2143 |
Montenegro | 2021-01-17 | 54 | 876 |
Andorra | 2021-06-07 | 7 | 196 |
China | 2021-01-17 | 26 | 10488 |
Benin | 2021-01-30 | 66 | 1102 |
Peru | 2020-12-31 | 24 | 41640 |
Liechtenstein | 2021-01-21 | 14 | 1092 |
Malaysia | 2020-12-28 | 34 | 32989 |
Trinidad And Tobago | 2021-03-23 | 5 | 2233 |
Madagascar | 2021-03-15 | 26 | 354 |
Jamaica | 2020-12-21 | 201 | 2286 |
Armenia | 2021-03-18 | 11 | 57 |
Uganda | 2021-03-25 | 17 | 796 |
Belize | 2021-01-29 | 27 | 888 |
Hungary | 2021-01-06 | 30 | 291 |
Venezuela | 2021-03-18 | 12 | 698 |
Vietnam | 2021-01-30 | 13 | 6849 |
Azerbaijan | 2021-02-01 | 3 | 57 |
Moldova | 2021-01-27 | 32 | 749 |
Barbados | 2020-12-31 | 15 | 145 |
Eswatini | 2021-06-02 | 6 | 748 |
Algeria | 2021-02-17 | 25 | 520 |
Fiji | 2020-12-28 | 4 | 475 |
Haiti | 2021-05-19 | 3 | 333 |
Suriname | 2021-02-18 | 46 | 871 |
Libya | 2021-02-17 | 4 | 107 |
Niger | 2021-01-09 | 3 | 91 |
Palestine | 2021-02-05 | 27 | 35 |
South Sudan | 2021-03-02 | 2 | 148 |
Afghanistan | 2021-03-21 | 50 | 77 |
Faroe Islands | 2021-03-08 | 1 | 1 |
Burundi | 2021-05-27 | 1 | 72 |
Mayotte | 2021-01-13 | 2 | 1061 |
Uzbekistan | 2021-06-25 | 3 | 92 |
Honduras | 2021-04-23 | 1 | 185 |
El Salvador | 2021-04-29 | 5 | 591 |
Mozambique | 2021-04-21 | 2 | 713 |
Botswana | 2021-05-15 | 1 | 2618 |
Guyana | 2021-03-31 | 1 | 125 |
Myanmar | 2021-05-28 | 2 | 81 |
Data source and processing
The data on this page is recent as of 2023-01-31, 22:14 GMT. All SARS-CoV-2 sequences were downloaded from GISAID and genomes were de-duplicated based on GISAID sequence name – note that the publically available metadata may not fully allow us to de-duplicate by patient. Full data processing pipeline found here. The sequences were then assigned lineages with pangolin 3.1.20, pangoLEARN version 2022-02-02.
Pangolin assigns B.1.1.7 to sequences with at least 5 of the 17 defining B.1.1.7 SNPs – defined here.
Caveat: Most locations outside the original focus have not reported sustained transmission and many cases have known travel links to the focal location. Increasing numbers of international cases is currently likely due to increased surveillance and vigilance.
Acknowledgements
Created by: Áine O'Toole and Verity Hill, Rambaut Group, University of Edinburgh. Flight volume data from Kamran Khan, Isaac Bogoch, Alexander Watts, Oliver Pybus, Moritz Kraemer. Sequences sourced from GISAID, full acknowledgements table here.
We have a publication in Wellcome Open Research here describing this web tracker.