Output
Output
Your output will be a csv file with taxon name and lineage assigned, one line corresponding to each sequence in the fasta file provided
Example:
| Taxon | Lineage | support | pangoLEARN_version | status | note |
|---|---|---|---|---|---|
| Virus1 | B.1 | 80 | 2020-04-27 | passed_qc | |
| Virus2 | A.1 | 65 | 2020-04-27 | passed_qc | |
| Virus3 | A.3 | 100 | 2020-04-27 | passed_qc | |
| Virus4 | B.1.4 | 82 | 2020-04-27 | passed_qc | |
| Virus5 | None | 0 | 2020-04-27 | fail | N_content:0.80 |
| Virus6 | None | 0 | 2020-04-27 | fail | seq_len:0 |
| Virus7 | None | 0 | 2020-04-27 | fail | failed to map |
| Virus8 | B.1.1.7 | 1.0 | 2020-10-27 | passed_qc | 12/17 B.1.1.7 SNPs |