Output

Output

Your output will be a csv file with taxon name and lineage assigned, one line corresponding to each sequence in the fasta file provided

Example:

Taxon Lineage support pangoLEARN_version status note
Virus1 B.1 80 2020-04-27 passed_qc  
Virus2 A.1 65 2020-04-27 passed_qc  
Virus3 A.3 100 2020-04-27 passed_qc  
Virus4 B.1.4 82 2020-04-27 passed_qc  
Virus5 None 0 2020-04-27 fail N_content:0.80
Virus6 None 0 2020-04-27 fail seq_len:0
Virus7 None 0 2020-04-27 fail failed to map
Virus8 B.1.1.7 1.0 2020-10-27 passed_qc 12/17 B.1.1.7 SNPs

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