Lineage B.1

Lineage summaries

B.1 lineage summary figure

Lineage name Most common countries Date range Number of taxa Days since last sampling Known Travel Recall value
B.1 UK (41%), USA (30%), Australia (3%) February 21 to August 19 10651 3 UK to China, Iceland (10), Iran to Finland, Lebanon, Turkey (3), Spain to Iceland (2), Austria to China, Iceland (13), Italy to Finland, China, Iceland (8), France to Benin, Madagascar, China, Taiwan, Costa_Rica, Iceland (7), USA;Czech_Republic to Taiwan (1), Poland to Taiwan (1), USA to Taiwan, Costa_Rica, China (7), Canada to China (1), Togo to Benin (1), Faroe_Islands to Iceland (1), Switzerland to Iceland (1), Denmark to Iceland (1), Norway to China (1) 0.93
B.1.1 UK (84%), USA (3%), Portugal (2%) February 16 to August 17 15735 5 Italy to Nigeria, Thailand, Czech_Republic, Chile, Iceland (9), Finland to Iceland (1), Austria to Iceland (2), Switzerland to Iceland (1), Saudia_Arabia to Turkey (1), UK to China, Iceland (4), USA to Taiwan, Brazil (3), Hungary to China (3), Nicaragua to Costa_Rica (2) 0.98
B.1.1.1 UK (86%), Australia (2%), Belgium (2%) March 03 to August 10 1091 12 Austria to Iceland (2) 0.99
B.1.1.10 UK (91%), USA (2%), Netherlands (2%) March 06 to July 20 454 33 USA to Iceland (1), UK to Iceland (1) 0.98
B.1.1.12 UK (100%) March 21 to April 22 27 122   1.0
B.1.1.13 UK (100%) March 28 to April 29 15 115   1.0
B.1.1.14 UK (100%) April 16 to June 27 58 56   1.0
B.1.1.15 UK (72%), Portugal (16%), Luxembourg (6%) March 09 to July 27 80 26   0.95
B.1.1.16 UK (100%) April 07 to June 16 42 67   0.97
B.1.1.17 Iceland (100%) March 06 to March 28 8 147 Italy to Iceland (1) 0.9
B.1.1.2 UK (100%) March 20 to July 15 475 38   0.99
B.1.1.20 UK (73%), Portugal (19%), USA (8%) March 21 to May 20 26 94   0.92
B.1.1.25 Bangladesh (94%), UK (3%), Australia (2%) March 23 to July 31 201 22   0.97
B.1.1.25.1 Australia (100%) March 19 to August 05 49 17   0.98
B.1.1.25.2 UK (100%) July 28 to August 20 117 2   1.0
B.1.1.26 USA (100%) April 20 to June 22 46 61   0.98
B.1.1.27 Oman (100%) March 21 to June 10 55 73   1.0
B.1.1.28 Brazil (86%), UK (10%), Australia (2%) March 16 to June 24 105 59   0.98
B.1.1.29 UK (100%) April 08 to June 15 114 68   0.97
B.1.1.3 UK (100%) March 18 to June 03 102 80   0.99
B.1.1.30 UK (100%), Australia (0%) March 12 to August 15 563 7   0.98
B.1.1.31 Netherlands (100%) March 26 to May 26 13 88   0.93
B.1.1.32 India (97%), UK (2%), Spain (0%) March 24 to July 26 261 27   0.97
B.1.1.33 Brazil (83%), USA (8%), Argentina (3%) March 07 to July 06 203 47   0.99
B.1.1.34 South_Africa (93%), USA (7%) March 19 to July 21 14 32   0.83
B.1.1.35 UK (100%), Switzerland (0%), Uganda (0%) March 02 to August 18 2649 4 UK to Iceland (1) 0.99
B.1.1.36 USA (100%) April 06 to May 28 19 86   1.0
B.1.1.37 UK (100%) March 23 to August 21 373 1   0.98
B.1.1.38 UK (100%) April 29 to June 24 94 59   0.98
B.1.1.39 Switzerland (97%), UK (3%) July 01 to July 30 32 23   1.0
B.1.1.4 UK (100%) March 31 to August 05 142 17   0.98
B.1.1.40 South_Africa (100%) May 13 to July 18 8 35   0.8
B.1.1.41 UK (100%) March 21 to July 02 103 51   1.0
B.1.1.42 Turkey (90%), India (5%), UK (5%) April 13 to July 07 20 46   0.95
B.1.1.43 UK (100%) March 25 to May 26 66 88   0.5
B.1.1.44 UK (100%) March 23 to July 27 195 26   0.99
B.1.1.45 UK (100%) May 22 to July 15 47 38   1.0
B.1.1.46 India (100%) April 20 to June 21 34 62   1.0
B.1.1.47 Switzerland (73%), UK (20%), Italy (3%) July 01 to July 30 30 23   0.9
B.1.1.48 Japan (100%) March 29 to April 11 7 133   1.0
B.1.1.49 UK (100%) March 23 to May 31 56 83   1.0
B.1.1.5 UK (53%), Belgium (30%), Iceland (6%) March 16 to May 22 47 92   0.98
B.1.1.50 Israel (47%), UK (47%), Netherlands (5%) March 29 to July 27 19 26   1.0
B.1.1.51 UK (100%) June 01 to August 06 160 16   0.99
B.1.1.52 South_Africa (100%) June 10 to July 24 20 29   0.75
B.1.1.53 South_Africa (94%), UK (6%) April 02 to July 20 17 33   0.93
B.1.1.54 South_Africa (98%), UK (1%), USA (1%) March 19 to July 30 178 23   0.98
B.1.1.55 UK (100%) March 20 to July 11 80 42   0.86
B.1.1.56 South_Africa (98%), Australia (2%) March 21 to July 30 60 23   0.95
B.1.1.57 South_Africa (100%) March 31 to July 30 17 23   1.0
B.1.1.58 Switzerland (100%) June 23 to July 28 7 25   0.8
B.1.1.59 UK (99%), Bangladesh (1%) March 08 to July 24 131 29   0.98
B.1.1.6 Austria (100%) February 26 to April 06 8 138   1.0
B.1.1.60 UK (99%), Austria (0%), Bangladesh (0%) March 19 to July 31 289 22   0.98
B.1.1.61 USA (100%) February 29 to July 17 30 36   1.0
B.1.1.62 South_Africa (89%), Australia (6%), UK (6%) March 23 to July 30 18 23   0.9
B.1.1.63 Hong_Kong (90%), Norway (10%) July 04 to July 20 10 33   1.0
B.1.1.64 UK (96%), Australia (1%), France (1%) March 11 to July 05 213 48   0.95
B.1.1.65 USA (100%) April 15 to July 01 32 52   0.97
B.1.1.66 South_Africa (95%), UK (5%) April 05 to July 30 20 23   0.9
B.1.1.67 UK (68%), South_Africa (32%) June 07 to August 04 37 18   1.0
B.1.1.68 Russia (100%) April 03 to April 30 17 114   1.0
B.1.1.7 UK (91%), Japan (4%), Australia (2%) March 07 to August 06 182 16 USA to Iceland (1) 0.96
B.1.1.70 UK (54%), Switzerland (33%), Serbia (6%) March 24 to July 27 90 26   0.89
B.1.1.71 Netherlands (47%), UK (29%), Belgium (8%) March 10 to May 20 49 94   0.96
B.1.1.72 India (59%), UK (33%), Singapore (4%) March 28 to August 04 54 18   0.8
B.1.1.73 USA (100%) April 21 to July 22 34 31   1.0
B.1.1.74 UK (86%), Belgium (14%) March 29 to August 05 57 17   0.87
B.1.1.75 Belgium (41%), Sweden (23%), South_Africa (23%) March 19 to July 30 22 23   0.85
B.1.1.76 USA (100%) May 04 to June 18 32 65   0.82
B.1.1.77 USA (100%) April 27 to July 07 327 46   0.98
B.1.1.8 India (100%) May 11 to June 13 69 70   0.99
B.1.102 Iceland (67%), UK (29%), Spain (4%) February 24 to June 14 24 69   1.0
B.1.103 USA (100%) April 20 to May 22 17 92   0.95
B.1.104 UK (96%), USA (2%), Singapore (1%) March 19 to July 16 178 37   0.5
B.1.105 UK (100%) March 06 to June 08 90 75   0.99
B.1.106 South_Africa (56%), USA (39%), Spain (3%) March 16 to July 17 36 36   0.84
B.1.107 Denmark (43%), UK (34%), USA (19%) March 18 to June 29 53 54   0.84
B.1.108 USA (100%) March 18 to April 27 15 117   1.0
B.1.109 Luxembourg (100%) April 12 to May 19 8 95   1.0
B.1.11 UK (98%), Australia (2%) March 27 to July 13 156 40   0.96
B.1.110 USA (73%), Chile (20%), Australia (7%) March 02 to June 30 55 53   0.98
B.1.111 UK (58%), Colombia (32%), USA (5%) March 07 to May 06 19 108   0.93
B.1.112 USA (100%) April 07 to June 29 27 54   1.0
B.1.113 India (100%) June 03 to June 20 43 63   0.86
B.1.114 Canada (92%), Singapore (8%) March 08 to April 25 13 119   1.0
B.1.115 UK (53%), Israel (47%) March 22 to July 21 30 32   0.93
B.1.116 USA (100%) April 29 to June 10 24 73   1.0
B.1.117 UK (100%) March 30 to May 15 64 99   0.98
B.1.118 Denmark (100%) March 19 to April 14 12 130   1.0
B.1.119 USA (100%) April 30 to June 10 18 73   0.95
B.1.12 UK (46%), Belgium (33%), Luxembourg (21%) March 05 to June 24 48 59   0.98
B.1.120 UK (100%) March 27 to June 15 121 68   0.97
B.1.124 USA (100%) March 26 to June 18 39 65   0.95
B.1.126 Germany (90%), Bosnia_and_Herzegovina (10%) March 23 to May 20 10 94   1.0
B.1.127 Ukraine (100%) May 15 to June 23 8 60   0.5
B.1.128 DRC (53%), Switzerland (27%), Canada (10%) March 16 to May 22 30 92   1.0
B.1.129 Sweden (90%), Russia (5%), UK (5%) March 22 to May 25 20 89   1.0
B.1.13 UK (97%), Australia (1%), Poland (0%) March 09 to June 02 333 81   0.99
B.1.130 Saudi_Arabia (81%), USA (12%), India (6%) March 20 to June 17 16 66   0.33
B.1.131 Ukraine (90%), Latvia (10%) March 23 to July 11 10 42   1.0
B.1.132 India (95%), South_Africa (5%) June 07 to July 20 20 33   0.35
B.1.133 South_Africa (100%) June 25 to July 17 7 36   0.6
B.1.134 USA (100%) April 08 to July 15 23 38   0.91
B.1.135 Portugal (100%) March 18 to March 31 6 144   0.8
B.1.136 India (100%) March 27 to June 10 22 73   0.96
B.1.137 USA (100%) April 13 to May 14 22 100   1.0
B.1.138 Australia (100%) March 22 to March 26 6 149   0.8
B.1.139 USA (99%), Cuba (1%) March 19 to July 21 86 32   0.97
B.1.14 USA (100%) March 31 to May 07 21 107   1.0
B.1.140 South_Africa (61%), UK (38%), Hong_Kong (2%) March 15 to July 24 61 29   0.9
B.1.141 UK (99%), Kenya (0%), Greece (0%) March 10 to June 20 527 63   0.98
B.1.142 UK (100%), Sweden (0%) March 12 to June 25 303 58   0.99
B.1.143 India (91%), Luxembourg (3%), Brazil (3%) March 15 to June 15 32 68   0.91
B.1.144 South_Africa (100%) June 11 to June 25 6 58   0.8
B.1.145 India (100%) April 21 to June 25 11 58   0.9
B.1.146 Switzerland (91%), UK (9%) June 23 to July 23 11 30   0.83
B.1.147 Canada (44%), UK (33%), Belgium (10%) March 04 to May 25 87 89   0.95
B.1.148 UK (100%) March 24 to June 02 21 81   1.0
B.1.149 DRC (100%) April 08 to May 13 12 101   1.0
B.1.150 India (80%), Iran (10%), UK (10%) March 18 to June 05 10 78   0.7
B.1.151 UK (96%), Belgium (1%), France (1%) March 21 to May 26 70 88   0.99
B.1.152 UK (100%) March 29 to July 02 18 51   0.95
B.1.153 UK (89%), Belgium (2%), France (2%) March 12 to May 05 54 109   0.93
B.1.154 USA (100%) April 21 to June 22 22 61   0.95
B.1.156 UK (100%) March 20 to April 29 50 115   0.98
B.1.157 UK (82%), Spain (15%), Belgium (1%) March 08 to June 24 131 59   0.99
B.1.158 Finland (50%), Egypt (50%) March 13 to June 02 12 81   0.73
B.1.159 France (91%), Bangladesh (9%) March 18 to July 06 11 47   0.8
B.1.160 Saudi_Arabia (42%), India (30%), UK (13%) February 04 to August 05 263 17 Saudia_Arabia to Turkey (1) 0.95
B.1.160.1 UK (90%), Austria (4%), India (1%) March 14 to July 15 138 38   0.99
B.1.161 USA (100%) March 27 to May 16 26 98   0.69
B.1.162 USA (98%), Canada (2%) March 25 to July 16 49 37   0.96
B.1.163 USA (100%) March 16 to July 16 10 37   0.9
B.1.164 Latvia (100%) July 06 to August 05 12 17   0.9
B.1.165 UK (100%) April 16 to June 11 60 72   0.93
B.1.166 USA (100%) March 04 to June 10 38 73   1.0
B.1.167 UK (100%) March 27 to June 04 13 79   1.0
B.1.168 UK (100%) April 23 to May 19 37 95   0.97
B.1.169 USA (100%) March 27 to July 02 17 51   0.95
B.1.176 UK (100%) March 29 to May 13 17 101   1.0
B.1.19 USA (100%) March 22 to April 17 10 127   1.0
B.1.2 USA (95%), UK (3%), Australia (1%) March 09 to July 21 919 32   0.96
B.1.21 USA (100%), Panama (0%) March 10 to July 11 214 42   0.98
B.1.22 Netherlands (83%), Australia (5%), Austria (2%) March 09 to May 29 120 85   1.0
B.1.23 Australia (91%), New_Zealand (9%) March 23 to April 30 33 114   0.97
B.1.25 Australia (100%) March 22 to March 25 12 150   0.9
B.1.26 USA (81%), New_Zealand (12%), India (2%) March 17 to July 26 106 27   0.97
B.1.3 USA (73%), UK (12%), Israel (10%) March 05 to July 29 451 24   0.99
B.1.3.1 South_Korea (100%) May 05 to July 11 130 42   1.0
B.1.34 UK (100%) March 17 to April 26 22 118   0.91
B.1.35 UK (100%) March 07 to August 03 210 19   0.92
B.1.36 India (45%), Saudi_Arabia (34%), Bangladesh (5%) February 16 to August 22 366 0 Saudia_Arabia to Turkey (1), Iran to Turkey (1) 0.85
B.1.36.1 India (69%), UK (17%), Australia (5%) May 12 to August 05 64 17   0.92
B.1.37 USA (100%) March 10 to May 12 19 102   1.0
B.1.38 USA (100%) March 17 to April 08 11 136   1.0
B.1.39 Denmark (85%), UK (10%), New_Zealand (2%) March 13 to April 28 40 116   0.97
B.1.40 UK (100%) March 18 to May 23 49 91   1.0
B.1.44 UK (100%) March 25 to June 19 109 64   0.98
B.1.5 UK (58%), Spain (18%), USA (10%) February 26 to August 16 2490 6 Spain to Costa_Rica, China, Iceland (4), Portugal to Taiwan (1), Saudia_Arabia to Turkey (1), Belgium;United_Kingdom to Taiwan (1), Switzerland to Iceland (2) 0.95
B.1.5.11 USA (86%), Mexico (7%), Romania (3%) March 19 to June 22 29 61   0.93
B.1.5.12 Senegal (100%) April 17 to June 20 42 63   0.91
B.1.5.13 Romania (93%), Switzerland (7%) April 09 to July 10 14 43   1.0
B.1.5.14 Russia (86%), Hong_Kong (14%) March 20 to April 22 7 122   0.9
B.1.5.15 USA (100%) April 24 to May 27 19 87   1.0
B.1.5.16 South_Africa (100%) May 30 to July 21 8 32   1.0
B.1.5.17 USA (100%) April 20 to June 23 12 60   1.0
B.1.5.18 UK (100%) March 22 to June 01 58 82   0.97
B.1.5.19 South_Africa (100%) May 13 to July 13 7 40   1.0
B.1.5.2 Netherlands (95%), UK (5%) March 14 to April 21 37 123   1.0
B.1.5.20 Romania (91%), Ukraine (9%) March 22 to June 09 11 74   0.53
B.1.5.21 UK (100%) April 24 to June 25 62 58   1.0
B.1.5.22 South_Africa (100%) May 13 to July 22 9 31   0.9
B.1.5.23 Spain (100%) March 14 to April 11 11 133   1.0
B.1.5.24 USA (61%), Norway (31%), Mexico (8%) April 06 to July 17 64 36   0.97
B.1.5.25 UK (100%) March 21 to May 18 62 96   0.95
B.1.5.26 UK (100%) April 06 to May 19 73 95   1.0
B.1.5.27 USA (99%), Latvia (1%) March 30 to July 23 82 30   0.99
B.1.5.28 UK (100%) April 07 to July 18 19 35   0.95
B.1.5.5 UK (97%), Ecuador (1%), Italy (1%) April 08 to July 17 77 36   0.95
B.1.5.6 UK (91%), Spain (7%), Netherlands (2%) February 28 to August 16 193 6   0.96
B.1.6 Belgium (76%), UK (10%), Australia (5%) March 05 to May 20 21 94   1.0
B.1.67 UK (96%), Ecuador (4%) March 25 to April 17 23 127   1.0
B.1.68.1 USA (100%) May 07 to May 08 6 106   0.8
B.1.69 UK (100%) March 06 to April 16 23 128   1.0
B.1.70 UK (100%) March 13 to April 24 36 120   0.94
B.1.71 UK (100%) March 18 to May 23 38 91   0.93
B.1.72 UK (100%) March 16 to April 24 52 120   0.94
B.1.74 Spain (78%), Portugal (11%), Chile (6%) March 01 to April 22 18 122   1.0
B.1.75 UK (97%), Mexico (1%), Luxembourg (1%) March 06 to July 17 154 36   0.97
B.1.76 UK (100%) February 24 to August 12 71 10   0.96
B.1.77 UK (97%), Canada (2%), USA (1%) March 14 to July 18 156 35   0.86
B.1.78 Netherlands (85%), UK (12%), DRC (3%) March 16 to August 10 33 12   0.84
B.1.79 UK (97%), India (1%), Cyprus (1%) March 28 to July 25 97 28   0.98
B.1.8 Netherlands (54%), South_Africa (10%), Iceland (5%) March 04 to May 26 94 88 Austria to Iceland (5), UK to South_Africa (1), Netherlands to South_Africa (1) 0.96
B.1.8.2 USA (100%) April 22 to May 07 19 107   1.0
B.1.80 India (91%), Australia (2%), Luxembourg (1%) April 06 to July 09 81 44   0.94
B.1.81 UK (97%), Iceland (3%) March 16 to May 07 34 107 Austria to Iceland (1) 0.94
B.1.82 UK (100%) May 19 to July 03 41 50   1.0
B.1.83 Belgium (95%), USA (5%) March 23 to April 29 21 115   1.0
B.1.84 DRC (100%) April 10 to May 23 17 91   0.9
B.1.88 UK (98%), Australia (1%), Romania (1%) March 12 to June 04 80 79   0.95
B.1.89 UK (100%) March 22 to May 21 79 93   0.99
B.1.9 UK (31%), Turkey (25%), Belgium (20%) March 14 to July 14 121 39 Saudia_Arabia to Turkey (1) 0.97
B.1.90 UK (100%) March 23 to May 16 38 98   0.89
B.1.91 Portugal (100%) March 14 to May 02 79 112   0.97
B.1.93 UK (99%), Switzerland (1%), Spain (0%) March 11 to July 22 885 31 Egypt to Taiwan (1) 1.0
B.1.94 Luxembourg (92%), Switzerland (8%) March 15 to April 24 12 120   1.0
B.1.95 India (100%) April 14 to May 24 12 90   0.9
B.1.96 Netherlands (94%), USA (6%) March 14 to May 07 18 107   1.0
B.1.97 UK (100%) March 24 to May 05 36 109   1.0
B.1.98 UK (92%), USA (5%), Australia (1%) February 03 to July 17 551 36 UK to Iceland (1) 0.98

Lineage descriptions

Lineage Notes
B.1 A large European lineage that corresponds to the Italian outbreak.
B.1.1 European lineage that’s been assigned due to high support and 3 clear SNPs 28881GA,28882GA,28883GC
B.1.1.1 UK/ Europe
B.1.1.10 Formerly UK/ Iceland, a lot of diversity in this lineage, now has a Turkish sequence.
B.1.1.12 Scottish lineage
B.1.1.13 UK lineage (CAMB)
B.1.1.14 Scottish lineage
B.1.1.15 Luxembourgh/ UK/ Portugal lineage
B.1.1.16 Wales lineage (some reassigned to B.1.1 as split up in most recent phylogeny)
B.1.1.17 Iceland lineage
B.1.1.19 Reassigned to B.1.1 as split up in most recent phylogeny. Australian lineage
B.1.1.2 Welsh lineage
B.1.1.20 Scottish lineage
B.1.1.21 Australian lineage reassigned to B.1.1 in most recent phylogeny
B.1.1.22 South African lineage
B.1.1.23 Bangladesh lineage, merged into B.1.1.25 in most recent phylogeny
B.1.1.24 Portuguese lineage
B.1.1.25 Bangladesh lineage
B.1.1.25.1 Australian lineage
B.1.1.25.2 UK lineage
B.1.1.26 US lineage (WA)
B.1.1.27 Lineage in Oman
B.1.1.28 Brazil lineage, some sister sequences from parent node are also from Brazil, however there’s sequences from a variety of other locations on that node.
B.1.1.29 Wales lineage
B.1.1.3 English lineage
B.1.1.30 UK lineage (Wales & England)
B.1.1.31 Netherlands lineage
B.1.1.32 Indian lineage
B.1.1.33 Majoritively South American lineage, lots of Brazil sequences represented
B.1.1.34 South African lineage
B.1.1.35 Previously a large part of B.1.1.1, however in the most recent phylogeny, this has become a sister lineage to B.1.1.1. UK sequences represented in this lineage.
B.1.1.36 USA (CA) lineage
B.1.1.37 UK lineage (England)
B.1.1.38 Wales lineage
B.1.1.39 Swiss lineage
B.1.1.4 UK lineage
B.1.1.40 South African lineage
B.1.1.41 English lineage
B.1.1.42 Turkish lineage
B.1.1.43 Scottish lineage
B.1.1.44 UK lineage
B.1.1.45 UK lineage
B.1.1.46 Indian lineage
B.1.1.47 Swiss lineage
B.1.1.48 Japanese lineage
B.1.1.49 Wales lineage
B.1.1.5 Iceland/ Belgium/ UK
B.1.1.50 UK/ Israel lineage
B.1.1.51 UK lineage
B.1.1.52 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.53 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.54 South African lineage
B.1.1.55 England lineage
B.1.1.56 South African lineage
B.1.1.57 South African lineage
B.1.1.58 Swiss lineage
B.1.1.59 Wales lineage
B.1.1.6 Austrian lineage
B.1.1.60 Northern Ireland lineage
B.1.1.61 USA lineage (CA)
B.1.1.62 South African lienage
B.1.1.63 Hong Kong lineage
B.1.1.64 UK lineage
B.1.1.65 USA lineage (WA), previously B.1.1.26, however split in most recent phylogeny
B.1.1.66 South African lineage
B.1.1.67 English/ South African lineage
B.1.1.68 Russian lineage
B.1.1.69 Switzerland/ UK/ Italy lineage
B.1.1.7 UK lineage
B.1.1.70 Northern Ireland lineage
B.1.1.71 Australian/ Belgium/ Netherlands lineage
B.1.1.72 UK/ India lineage
B.1.1.73 USA lineage
B.1.1.74 Northern Ireland/ Belgium lineage
B.1.1.75 Belgium/ South Africa/ DRC lineage
B.1.1.76 USA lineage (WA)
B.1.1.77 USA lineage (WA)
B.1.1.8 Indian lineage
B.1.1.9 Reassigned B.1.1, split into three this week, unstable lineage
B.1.1.p11 Reassigned B.1.1, previously Portugal/ Wales/ England/ Ecuador
B.1.100 Reassigned to B.1.5.26, Scottish lineage
B.1.101 Scottish lineage, reassigned to B.1.5.18
B.1.102 Icelandic lineage
B.1.103 US lineage (MI)
B.1.104 English lineage
B.1.105 English lineage (CAMB)
B.1.106 South African lineage, some USA sequences
B.1.107 Danish lineage, with new USA and UK sequences nested within (previously B.1.5/ B.1.5.8)
B.1.108 US lineage
B.1.109 Luxembourg lineage
B.1.11 UK lineage, pruned down relative to previous release. A number of sequences previously assigned B.1.11 reassigned to B.1 and some reassigned to B.1.88.
B.1.110 Chilean/ US lineage
B.1.111 South American/ English lineage
B.1.112 US lineage (UT & WI)
B.1.113 Indian lineage, some sequences reassigned from B.1.36
B.1.114 Canadian lineage
B.1.115 Israel/ UK lineage
B.1.116 US lineage
B.1.117 UK lineage (BRIS)
B.1.118 Danish lineage
B.1.119 US lineage (MI)
B.1.12 BeNeLux/ UK lineage
B.1.120 Wales lineage
B.1.121 Australian lineage
B.1.122 Welsh lineage
B.1.123 Washington lineage, had previously been part of B.1.21, and has rejoined it in the most recent phylogeny
B.1.124 USA lineage (WA)
B.1.125 South African lineage
B.1.126 German lineage
B.1.127 Ukraine/ Latvian lineage
B.1.128 European/ DRC lineage
B.1.129 Swedish lineage
B.1.13 UK lineage
B.1.130 Saudi Arabian lineage, some sequences had previously been assigned B.1.36. Possible that it may be reassigned B.1.36 again in future due to uncertainty in ML searching.
B.1.131 Ukraine lineage
B.1.132 Indian lineage, some sequences previously assigned B.1.36 & B.1.113. Possible that it may be reassigned B.1.36 again in future due to uncertainty in ML searching.
B.1.133 South African lineage
B.1.134 USA lineage (OR)
B.1.135 Small Portuguese lineage
B.1.136 Indian lineage
B.1.137 USA lineage (UT)
B.1.138 Small Australian lineage
B.1.139 USA lineage
B.1.14 USA lineage
B.1.140 South African/ English lineage
B.1.141 Scottish lineage
B.1.142 Welsh lineage (B.1.5.9 reassigned as it falls outside of B.1.5 in the most recent phylogeny)
B.1.143 Indian lineage
B.1.144 South African lineage
B.1.145 Indian lineage
B.1.146 Swiss lineage
B.1.147 Canadian lineage, with French, Belgian, DRC and English sequences
B.1.148 English lineage
B.1.149 DRC lineage
B.1.150 Indian lineage with very long branch Iran sequence
B.1.151 UK lineage
B.1.152 English lineage
B.1.153 English lineage with some Australian, New Zealand and European sequences
B.1.154 USA lineage
B.1.155 USA (WA) lineage
B.1.156 Scottish lineage
B.1.157 UK lineage with some European sequences
B.1.158 Finland lineage
B.1.159 France/ Bangladesh lineage
B.1.160 Previously part of B.1.36: Tukey, India Saudi Arabia lineage (split in the most recent phylogeny)
B.1.160.1 English lineage nested in diversity of B.1.160
B.1.161 USA lineage (OR)
B.1.162 USA lineage (WI)
B.1.163 USA lineage (CA & OR)
B.1.164 Latvian lineage
B.1.165 English lineage
B.1.166 USA lineage (CA)
B.1.167 UK lineage
B.1.168 Scottish lineage
B.1.169 USA lineage (WA & OR)
B.1.170 German lineage
B.1.171 Lineage with sequences from Israel
B.1.172 USA lineage (CA) (also Ireland)
B.1.173 USA lineage (WA) (also Sierra Leone)
B.1.174 English lineage
B.1.175 English lineage (CAMB)
B.1.176 English lineage (SHEF)
B.1.19 USA lineage (WI)
B.1.2 USA lineage
B.1.21 Washington (USA)
B.1.22 Netherlands lineage, now with some European sequences and some Australian sequences
B.1.23 Australian lineage with a New Zealand sequence at base
B.1.25 Australian lineage
B.1.26 New Zealand/ USA lineage
B.1.29 USA lineage reassigned to B.1 as the structure of this lineage not present in the most recent phylogeny
B.1.3 USA lineage
B.1.3.1 South Korean lineage
B.1.30 English lineage
B.1.31 Australia lineage split up this phylogeny, reassigned to B.1
B.1.32 Swedish lineage
B.1.34 England lineage (NOTT)
B.1.35 UK lineage (Wales & England)
B.1.36 Global lineage with lots of representation of sequences from India and Saudi Arabia. Sequences also from Europe and UK. Now includes sequences that previously had been assigned B.1.113.
B.1.36.1 Indian lineage
B.1.36.2 Bangladesh lineage
B.1.37 USA lineage (VA)
B.1.38 USA lineage
B.1.39 Danish lineage
B.1.40 Scottish lineage
B.1.41 USA lineage: Split up in most recent phylogeny, reassigned to B.1
B.1.42 Sweden/ Denmark lineage
B.1.43 USA lineage
B.1.44 Wales lineage
B.1.5 European lineage/ lots of Spanish sequences towards the basal end of the subtree and exports around the globe. Low support at parent node now, potentially as a result of homoplasies
B.1.5.10 UK lineage
B.1.5.11 USA lineage
B.1.5.12 Senegal lineage
B.1.5.13 Romanian lineage
B.1.5.14 Russian lineage
B.1.5.15 USA lineage (CA)
B.1.5.16 South African lineage
B.1.5.17 USA lineage (OR & AK)
B.1.5.18 Scottish lineage (previously B.1.101)
B.1.5.19 South African lineage
B.1.5.2 Netherlands lineage
B.1.5.20 Romanian lineage
B.1.5.21 Scottish lineage
B.1.5.22 South Arican lineage
B.1.5.23 Spanish lineage
B.1.5.24 Norwegian lineage
B.1.5.25 UK lineage (previously B.1.99)
B.1.5.26 Scottish lineage (previously B.1.100)
B.1.5.27 USA lineage (CA)
B.1.5.28 English lineage
B.1.5.3 English lineage (now containing an Australian & Swedish seqeuence)
B.1.5.4 Reassigned to B.1.5 as B.1.5 now seems to be European/ Spanish, so B.1.5.4 not a new introduction
B.1.5.5 English lineage
B.1.5.6 UK lineage
B.1.5.8 US lineage
B.1.5.9 Welsh lineage (reassigned to B.1.142 as it falls outside of B.1.5 in the most recent phylogeny)
B.1.6 Belgian lineage
B.1.66 English lineage
B.1.67 Welsh lineage, sequence from Ecuador
B.1.68 USA lineage (UT)
B.1.68.1 USA lineage (TX)
B.1.69 Scottish lineage
B.1.70 Scottish lineage
B.1.71 UK lineage (Scotland and Wales sequences )
B.1.72 UK lineage (BRIS)
B.1.74 Spanish lineage, with sequences from Portugal too
B.1.75 English lineage
B.1.76 English lineage
B.1.77 UK lineage
B.1.78 Netherlands lineage
B.1.79 English lineage, now reassigned to B.1.5
B.1.8 Netherlands/ South African lineage, with sequences from Europe
B.1.8.1 South African lineage (sequences reassigned to B.1.8)
B.1.8.2 USA (CA) lineage
B.1.80 Indian lineage with an English sequence
B.1.81 English lineage
B.1.82 English lineage
B.1.83 Belgian lineage
B.1.84 DRC lineage
B.1.85 USA lineage
B.1.86 English lineage (SHEF)
B.1.87 Indian lineage, with some Chinese and South African sequences
B.1.88 UK lineage, previously some of these seqeunces had been assigned B.1.11, but this clade has split in the tree.
B.1.89 Scottish lineage
B.1.9 Netherlands/ Belgium/ Turkey/ DRC
B.1.90 Scottish lineage
B.1.91 Portuguese lineage, parent node in B.1 also has Portuguese diversity, however is interspersed with sequences from UK and other European countries
B.1.93 UK lineage, majoritively Scottish sequences
B.1.94 Luxembourg lineage
B.1.95 Indian lineage
B.1.96 Netherlands lineage
B.1.97 English lineage
B.1.98 UK lineage with some USA and Australian sequences in
B.1.99 Now reassigned to B.1.5.25, English lineage
B.1.p16 Belgium lineage, reassigned to B.1