Lineage B.1.1

Lineage summaries

B.1.1 lineage summary figure

Lineage name Most common countries Date range Number of taxa Known Travel Recall value
B.1.1 UK (84%), USA (3%), Portugal (2%) February 16 to August 17 15735 Italy to Chile, Thailand, Nigeria, Czech_Republic, Iceland (9), Finland to Iceland (1), Austria to Iceland (2), Switzerland to Iceland (1), Saudia_Arabia to Turkey (1), UK to Iceland, China (4), USA to Taiwan, Brazil (3), Hungary to China (3), Nicaragua to Costa_Rica (2) 0.98
B.1.1.1 UK (86%), Australia (2%), Belgium (2%) March 03 to August 10 1091 Austria to Iceland (2) 0.99
B.1.1.10 UK (91%), USA (2%), Netherlands (2%) March 06 to July 20 454 USA to Iceland (1), UK to Iceland (1) 0.98
B.1.1.12 UK (100%) March 21 to April 22 27   1.0
B.1.1.13 UK (100%) March 28 to April 29 15   1.0
B.1.1.14 UK (100%) April 16 to June 27 58   1.0
B.1.1.15 UK (72%), Portugal (16%), Luxembourg (6%) March 09 to July 27 80   0.95
B.1.1.16 UK (100%) April 07 to June 16 42   0.97
B.1.1.17 Iceland (100%) March 06 to March 28 8 Italy to Iceland (1) 0.9
B.1.1.2 UK (100%) March 20 to July 15 475   0.99
B.1.1.20 UK (73%), Portugal (19%), USA (8%) March 21 to May 20 26   0.92
B.1.1.25 Bangladesh (94%), UK (3%), Australia (2%) March 23 to July 31 201   0.97
B.1.1.26 USA (100%) April 20 to June 22 46   0.98
B.1.1.27 Oman (100%) March 21 to June 10 55   1.0
B.1.1.28 Brazil (86%), UK (10%), Australia (2%) March 16 to June 24 105   0.98
B.1.1.29 UK (100%) April 08 to June 15 114   0.97
B.1.1.3 UK (100%) March 18 to June 03 102   0.99
B.1.1.30 UK (100%), Australia (0%) March 12 to August 15 563   0.98
B.1.1.31 Netherlands (100%) March 26 to May 26 13   0.93
B.1.1.32 India (97%), UK (2%), Spain (0%) March 24 to July 26 261   0.97
B.1.1.33 Brazil (83%), USA (8%), Argentina (3%) March 07 to July 06 203   0.99
B.1.1.34 South_Africa (93%), USA (7%) March 19 to July 21 14   0.83
B.1.1.35 UK (100%), Switzerland (0%), Uganda (0%) March 02 to August 18 2649 UK to Iceland (1) 0.99
B.1.1.36 USA (100%) April 06 to May 28 19   1.0
B.1.1.37 UK (100%) March 23 to August 21 373   0.98
B.1.1.38 UK (100%) April 29 to June 24 94   0.98
B.1.1.39 Switzerland (97%), UK (3%) July 01 to July 30 32   1.0
B.1.1.4 UK (100%) March 31 to August 05 142   0.98
B.1.1.40 South_Africa (100%) May 13 to July 18 8   0.8
B.1.1.41 UK (100%) March 21 to July 02 103   1.0
B.1.1.42 Turkey (90%), India (5%), UK (5%) April 13 to July 07 20   0.95
B.1.1.43 UK (100%) March 25 to May 26 66   0.5
B.1.1.44 UK (100%) March 23 to July 27 195   0.99
B.1.1.45 UK (100%) May 22 to July 15 47   1.0
B.1.1.46 India (100%) April 20 to June 21 34   1.0
B.1.1.47 Switzerland (73%), UK (20%), Italy (3%) July 01 to July 30 30   0.9
B.1.1.48 Japan (100%) March 29 to April 11 7   1.0
B.1.1.49 UK (100%) March 23 to May 31 56   1.0
B.1.1.5 UK (53%), Belgium (30%), Iceland (6%) March 16 to May 22 47   0.98
B.1.1.50 Israel (47%), UK (47%), Netherlands (5%) March 29 to July 27 19   1.0
B.1.1.51 UK (100%) June 01 to August 06 160   0.99
B.1.1.52 South_Africa (100%) June 10 to July 24 20   0.75
B.1.1.53 South_Africa (94%), UK (6%) April 02 to July 20 17   0.93
B.1.1.54 South_Africa (98%), UK (1%), USA (1%) March 19 to July 30 178   0.98
B.1.1.55 UK (100%) March 20 to July 11 80   0.86
B.1.1.56 South_Africa (98%), Australia (2%) March 21 to July 30 60   0.95
B.1.1.57 South_Africa (100%) March 31 to July 30 17   1.0
B.1.1.58 Switzerland (100%) June 23 to July 28 7   0.8
B.1.1.59 UK (99%), Bangladesh (1%) March 08 to July 24 131   0.98
B.1.1.6 Austria (100%) February 26 to April 06 8   1.0
B.1.1.60 UK (99%), Austria (0%), Bangladesh (0%) March 19 to July 31 289   0.98
B.1.1.61 USA (100%) February 29 to July 17 30   1.0
B.1.1.62 South_Africa (89%), Australia (6%), UK (6%) March 23 to July 30 18   0.9
B.1.1.63 Hong_Kong (90%), Norway (10%) July 04 to July 20 10   1.0
B.1.1.64 UK (96%), Australia (1%), France (1%) March 11 to July 05 213   0.95
B.1.1.65 USA (100%) April 15 to July 01 32   0.97
B.1.1.66 South_Africa (95%), UK (5%) April 05 to July 30 20   0.9
B.1.1.67 UK (68%), South_Africa (32%) June 07 to August 04 37   1.0
B.1.1.68 Russia (100%) April 03 to April 30 17   1.0
B.1.1.7 UK (91%), Japan (4%), Australia (2%) March 07 to August 06 182 USA to Iceland (1) 0.96
B.1.1.70 UK (54%), Switzerland (33%), Serbia (6%) March 24 to July 27 90   0.89
B.1.1.71 Netherlands (47%), UK (29%), Belgium (8%) March 10 to May 20 49   0.96
B.1.1.72 India (59%), UK (33%), Singapore (4%) March 28 to August 04 54   0.8
B.1.1.73 USA (100%) April 21 to July 22 34   1.0
B.1.1.74 UK (86%), Belgium (14%) March 29 to August 05 57   0.87
B.1.1.75 Belgium (41%), Sweden (23%), South_Africa (23%) March 19 to July 30 22   0.85
B.1.1.76 USA (100%) May 04 to June 18 32   0.82
B.1.1.77 USA (100%) April 27 to July 07 327   0.98
B.1.1.8 India (100%) May 11 to June 13 69   0.99

Lineage descriptions

Lineage Notes
B.1.1 European lineage that’s been assigned due to high support and 3 clear SNPs 28881GA,28882GA,28883GC
B.1.1.1 UK/ Europe
B.1.1.10 Formerly UK/ Iceland, a lot of diversity in this lineage, now has a Turkish sequence.
B.1.1.12 Scottish lineage
B.1.1.13 UK lineage (CAMB)
B.1.1.14 Scottish lineage
B.1.1.15 Luxembourgh/ UK/ Portugal lineage
B.1.1.16 Wales lineage (some reassigned to B.1.1 as split up in most recent phylogeny)
B.1.1.17 Iceland lineage
B.1.1.19 Reassigned to B.1.1 as split up in most recent phylogeny. Australian lineage
B.1.1.2 Welsh lineage
B.1.1.20 Scottish lineage
B.1.1.21 Australian lineage reassigned to B.1.1 in most recent phylogeny
B.1.1.22 South African lineage
B.1.1.23 Bangladesh lineage, merged into B.1.1.25 in most recent phylogeny
B.1.1.24 Portuguese lineage
B.1.1.25 Bangladesh lineage
B.1.1.26 US lineage (WA)
B.1.1.27 Lineage in Oman
B.1.1.28 Brazil lineage, some sister sequences from parent node are also from Brazil, however there’s sequences from a variety of other locations on that node.
B.1.1.29 Wales lineage
B.1.1.3 English lineage
B.1.1.30 UK lineage (Wales & England)
B.1.1.31 Netherlands lineage
B.1.1.32 Indian lineage
B.1.1.33 Majoritively South American lineage, lots of Brazil sequences represented
B.1.1.34 South African lineage
B.1.1.35 Previously a large part of B.1.1.1, however in the most recent phylogeny, this has become a sister lineage to B.1.1.1. UK sequences represented in this lineage.
B.1.1.36 USA (CA) lineage
B.1.1.37 UK lineage (England)
B.1.1.38 Wales lineage
B.1.1.39 Swiss lineage
B.1.1.4 UK lineage
B.1.1.40 South African lineage
B.1.1.41 English lineage
B.1.1.42 Turkish lineage
B.1.1.43 Scottish lineage
B.1.1.44 UK lineage
B.1.1.45 UK lineage
B.1.1.46 Indian lineage
B.1.1.47 Swiss lineage
B.1.1.48 Japanese lineage
B.1.1.49 Wales lineage
B.1.1.5 Iceland/ Belgium/ UK
B.1.1.50 UK/ Israel lineage
B.1.1.51 UK lineage
B.1.1.52 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.53 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.54 South African lineage
B.1.1.55 England lineage
B.1.1.56 South African lineage
B.1.1.57 South African lineage
B.1.1.58 Swiss lineage
B.1.1.59 Wales lineage
B.1.1.6 Austrian lineage
B.1.1.60 Northern Ireland lineage
B.1.1.61 USA lineage (CA)
B.1.1.62 South African lienage
B.1.1.63 Hong Kong lineage
B.1.1.64 UK lineage
B.1.1.65 USA lineage (WA), previously B.1.1.26, however split in most recent phylogeny
B.1.1.66 South African lineage
B.1.1.67 English/ South African lineage
B.1.1.68 Russian lineage
B.1.1.69 Switzerland/ UK/ Italy lineage
B.1.1.7 UK lineage
B.1.1.70 Northern Ireland lineage
B.1.1.71 Australian/ Belgium/ Netherlands lineage
B.1.1.72 UK/ India lineage
B.1.1.73 USA lineage
B.1.1.74 Northern Ireland/ Belgium lineage
B.1.1.75 Belgium/ South Africa/ DRC lineage
B.1.1.76 USA lineage (WA)
B.1.1.77 USA lineage (WA)
B.1.1.8 Indian lineage
B.1.1.9 Reassigned B.1.1, split into three this week, unstable lineage
B.1.1.p11 Reassigned B.1.1, previously Portugal/ Wales/ England/ Ecuador