Lineage B.1.1

Lineage summaries

B.1.1 lineage summary figure

Lineage name Most common countries Date range Number of taxa Days since last sampling Known Travel Recall value
B.1.1 UK (84%), USA (3%), Portugal (2%) February 16 to August 17 15735 5 Italy to Nigeria, Thailand, Czech_Republic, Chile, Iceland (9), Finland to Iceland (1), Austria to Iceland (2), Switzerland to Iceland (1), Saudia_Arabia to Turkey (1), UK to China, Iceland (4), USA to Taiwan, Brazil (3), Hungary to China (3), Nicaragua to Costa_Rica (2) 0.98
B.1.1.1 UK (86%), Australia (2%), Belgium (2%) March 03 to August 10 1091 12 Austria to Iceland (2) 0.99
B.1.1.10 UK (91%), USA (2%), Netherlands (2%) March 06 to July 20 454 33 USA to Iceland (1), UK to Iceland (1) 0.98
B.1.1.12 UK (100%) March 21 to April 22 27 122   1.0
B.1.1.13 UK (100%) March 28 to April 29 15 115   1.0
B.1.1.14 UK (100%) April 16 to June 27 58 56   1.0
B.1.1.15 UK (72%), Portugal (16%), Luxembourg (6%) March 09 to July 27 80 26   0.95
B.1.1.16 UK (100%) April 07 to June 16 42 67   0.97
B.1.1.17 Iceland (100%) March 06 to March 28 8 147 Italy to Iceland (1) 0.9
B.1.1.2 UK (100%) March 20 to July 15 475 38   0.99
B.1.1.20 UK (73%), Portugal (19%), USA (8%) March 21 to May 20 26 94   0.92
B.1.1.25 Bangladesh (94%), UK (3%), Australia (2%) March 23 to July 31 201 22   0.97
B.1.1.25.1 Australia (100%) March 19 to August 05 49 17   0.98
B.1.1.25.2 UK (100%) July 28 to August 20 117 2   1.0
B.1.1.26 USA (100%) April 20 to June 22 46 61   0.98
B.1.1.27 Oman (100%) March 21 to June 10 55 73   1.0
B.1.1.28 Brazil (86%), UK (10%), Australia (2%) March 16 to June 24 105 59   0.98
B.1.1.29 UK (100%) April 08 to June 15 114 68   0.97
B.1.1.3 UK (100%) March 18 to June 03 102 80   0.99
B.1.1.30 UK (100%), Australia (0%) March 12 to August 15 563 7   0.98
B.1.1.31 Netherlands (100%) March 26 to May 26 13 88   0.93
B.1.1.32 India (97%), UK (2%), Spain (0%) March 24 to July 26 261 27   0.97
B.1.1.33 Brazil (83%), USA (8%), Argentina (3%) March 07 to July 06 203 47   0.99
B.1.1.34 South_Africa (93%), USA (7%) March 19 to July 21 14 32   0.83
B.1.1.35 UK (100%), Switzerland (0%), Uganda (0%) March 02 to August 18 2649 4 UK to Iceland (1) 0.99
B.1.1.36 USA (100%) April 06 to May 28 19 86   1.0
B.1.1.37 UK (100%) March 23 to August 21 373 1   0.98
B.1.1.38 UK (100%) April 29 to June 24 94 59   0.98
B.1.1.39 Switzerland (97%), UK (3%) July 01 to July 30 32 23   1.0
B.1.1.4 UK (100%) March 31 to August 05 142 17   0.98
B.1.1.40 South_Africa (100%) May 13 to July 18 8 35   0.8
B.1.1.41 UK (100%) March 21 to July 02 103 51   1.0
B.1.1.42 Turkey (90%), India (5%), UK (5%) April 13 to July 07 20 46   0.95
B.1.1.43 UK (100%) March 25 to May 26 66 88   0.5
B.1.1.44 UK (100%) March 23 to July 27 195 26   0.99
B.1.1.45 UK (100%) May 22 to July 15 47 38   1.0
B.1.1.46 India (100%) April 20 to June 21 34 62   1.0
B.1.1.47 Switzerland (73%), UK (20%), Italy (3%) July 01 to July 30 30 23   0.9
B.1.1.48 Japan (100%) March 29 to April 11 7 133   1.0
B.1.1.49 UK (100%) March 23 to May 31 56 83   1.0
B.1.1.5 UK (53%), Belgium (30%), Iceland (6%) March 16 to May 22 47 92   0.98
B.1.1.50 Israel (47%), UK (47%), Netherlands (5%) March 29 to July 27 19 26   1.0
B.1.1.51 UK (100%) June 01 to August 06 160 16   0.99
B.1.1.52 South_Africa (100%) June 10 to July 24 20 29   0.75
B.1.1.53 South_Africa (94%), UK (6%) April 02 to July 20 17 33   0.93
B.1.1.54 South_Africa (98%), UK (1%), USA (1%) March 19 to July 30 178 23   0.98
B.1.1.55 UK (100%) March 20 to July 11 80 42   0.86
B.1.1.56 South_Africa (98%), Australia (2%) March 21 to July 30 60 23   0.95
B.1.1.57 South_Africa (100%) March 31 to July 30 17 23   1.0
B.1.1.58 Switzerland (100%) June 23 to July 28 7 25   0.8
B.1.1.59 UK (99%), Bangladesh (1%) March 08 to July 24 131 29   0.98
B.1.1.6 Austria (100%) February 26 to April 06 8 138   1.0
B.1.1.60 UK (99%), Austria (0%), Bangladesh (0%) March 19 to July 31 289 22   0.98
B.1.1.61 USA (100%) February 29 to July 17 30 36   1.0
B.1.1.62 South_Africa (89%), Australia (6%), UK (6%) March 23 to July 30 18 23   0.9
B.1.1.63 Hong_Kong (90%), Norway (10%) July 04 to July 20 10 33   1.0
B.1.1.64 UK (96%), Australia (1%), France (1%) March 11 to July 05 213 48   0.95
B.1.1.65 USA (100%) April 15 to July 01 32 52   0.97
B.1.1.66 South_Africa (95%), UK (5%) April 05 to July 30 20 23   0.9
B.1.1.67 UK (68%), South_Africa (32%) June 07 to August 04 37 18   1.0
B.1.1.68 Russia (100%) April 03 to April 30 17 114   1.0
B.1.1.7 UK (91%), Japan (4%), Australia (2%) March 07 to August 06 182 16 USA to Iceland (1) 0.96
B.1.1.70 UK (54%), Switzerland (33%), Serbia (6%) March 24 to July 27 90 26   0.89
B.1.1.71 Netherlands (47%), UK (29%), Belgium (8%) March 10 to May 20 49 94   0.96
B.1.1.72 India (59%), UK (33%), Singapore (4%) March 28 to August 04 54 18   0.8
B.1.1.73 USA (100%) April 21 to July 22 34 31   1.0
B.1.1.74 UK (86%), Belgium (14%) March 29 to August 05 57 17   0.87
B.1.1.75 Belgium (41%), Sweden (23%), South_Africa (23%) March 19 to July 30 22 23   0.85
B.1.1.76 USA (100%) May 04 to June 18 32 65   0.82
B.1.1.77 USA (100%) April 27 to July 07 327 46   0.98
B.1.1.8 India (100%) May 11 to June 13 69 70   0.99

Lineage descriptions

Lineage Notes
B.1.1 European lineage that’s been assigned due to high support and 3 clear SNPs 28881GA,28882GA,28883GC
B.1.1.1 UK/ Europe
B.1.1.10 Formerly UK/ Iceland, a lot of diversity in this lineage, now has a Turkish sequence.
B.1.1.12 Scottish lineage
B.1.1.13 UK lineage (CAMB)
B.1.1.14 Scottish lineage
B.1.1.15 Luxembourgh/ UK/ Portugal lineage
B.1.1.16 Wales lineage (some reassigned to B.1.1 as split up in most recent phylogeny)
B.1.1.17 Iceland lineage
B.1.1.19 Reassigned to B.1.1 as split up in most recent phylogeny. Australian lineage
B.1.1.2 Welsh lineage
B.1.1.20 Scottish lineage
B.1.1.21 Australian lineage reassigned to B.1.1 in most recent phylogeny
B.1.1.22 South African lineage
B.1.1.23 Bangladesh lineage, merged into B.1.1.25 in most recent phylogeny
B.1.1.24 Portuguese lineage
B.1.1.25 Bangladesh lineage
B.1.1.25.1 Australian lineage
B.1.1.25.2 UK lineage
B.1.1.26 US lineage (WA)
B.1.1.27 Lineage in Oman
B.1.1.28 Brazil lineage, some sister sequences from parent node are also from Brazil, however there’s sequences from a variety of other locations on that node.
B.1.1.29 Wales lineage
B.1.1.3 English lineage
B.1.1.30 UK lineage (Wales & England)
B.1.1.31 Netherlands lineage
B.1.1.32 Indian lineage
B.1.1.33 Majoritively South American lineage, lots of Brazil sequences represented
B.1.1.34 South African lineage
B.1.1.35 Previously a large part of B.1.1.1, however in the most recent phylogeny, this has become a sister lineage to B.1.1.1. UK sequences represented in this lineage.
B.1.1.36 USA (CA) lineage
B.1.1.37 UK lineage (England)
B.1.1.38 Wales lineage
B.1.1.39 Swiss lineage
B.1.1.4 UK lineage
B.1.1.40 South African lineage
B.1.1.41 English lineage
B.1.1.42 Turkish lineage
B.1.1.43 Scottish lineage
B.1.1.44 UK lineage
B.1.1.45 UK lineage
B.1.1.46 Indian lineage
B.1.1.47 Swiss lineage
B.1.1.48 Japanese lineage
B.1.1.49 Wales lineage
B.1.1.5 Iceland/ Belgium/ UK
B.1.1.50 UK/ Israel lineage
B.1.1.51 UK lineage
B.1.1.52 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.53 South African lineage (same parent node as B.1.1.53, but parent node is a large polytomy)
B.1.1.54 South African lineage
B.1.1.55 England lineage
B.1.1.56 South African lineage
B.1.1.57 South African lineage
B.1.1.58 Swiss lineage
B.1.1.59 Wales lineage
B.1.1.6 Austrian lineage
B.1.1.60 Northern Ireland lineage
B.1.1.61 USA lineage (CA)
B.1.1.62 South African lienage
B.1.1.63 Hong Kong lineage
B.1.1.64 UK lineage
B.1.1.65 USA lineage (WA), previously B.1.1.26, however split in most recent phylogeny
B.1.1.66 South African lineage
B.1.1.67 English/ South African lineage
B.1.1.68 Russian lineage
B.1.1.69 Switzerland/ UK/ Italy lineage
B.1.1.7 UK lineage
B.1.1.70 Northern Ireland lineage
B.1.1.71 Australian/ Belgium/ Netherlands lineage
B.1.1.72 UK/ India lineage
B.1.1.73 USA lineage
B.1.1.74 Northern Ireland/ Belgium lineage
B.1.1.75 Belgium/ South Africa/ DRC lineage
B.1.1.76 USA lineage (WA)
B.1.1.77 USA lineage (WA)
B.1.1.8 Indian lineage
B.1.1.9 Reassigned B.1.1, split into three this week, unstable lineage
B.1.1.p11 Reassigned B.1.1, previously Portugal/ Wales/ England/ Ecuador